PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0101s0042.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 450aa    MW: 49681.2 Da    PI: 8.4997
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0101s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd++l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Sphfalx0101s0042.1.p 14 KGAWTPEEDQKLLAYIQSHGHGSWRALPKQAGLLRCGKSCRLRWTNYL 61
                          79******************************99************97 PP
2Myb_DNA-binding52.61.1e-1667112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rgr++ eE++ + ++++ lG++ W++Ia +++ gRt++++k++w+++l
  Sphfalx0101s0042.1.p  67 RGRFSLEEEQVISHLHAILGNR-WSAIATHLP-GRTDNEIKNYWNTHL 112
                           89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.592961IPR017930Myb domain
SuperFamilySSF466892.49E-2911108IPR009057Homeodomain-like
SMARTSM007171.9E-131363IPR001005SANT/Myb domain
PfamPF002496.3E-161461IPR001005SANT/Myb domain
CDDcd001676.20E-111661No hitNo description
PROSITE profilePS5129425.67462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-2665116IPR009057Homeodomain-like
SMARTSM007177.5E-1666114IPR001005SANT/Myb domain
PfamPF002491.0E-1467112IPR001005SANT/Myb domain
CDDcd001672.33E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGRAPCCDKI GLRKGAWTPE EDQKLLAYIQ SHGHGSWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGRF SLEEEQVISH LHAILGNRWS AIATHLPGRT DNEIKNYWNT HLKKRMNMQT  120
GGIRDPAMST THSKTSTETL DLVLDSPDMK PLISSKLSHM SQWDSARLEA EVRLSHDSQL  180
KVQDCESLLG RMQGLMCPKI HNSLATHQAT SPDCKELLSQ RSVQMFQSPE AASSHLLNNC  240
WKPTSFRSHE GVDHISPTST LCSLEGQHSS PSPAGSETHT GYVKPEHFIL KLLLQNSSSS  300
QISHKQSSGL MHGTAINGPN QSPWQQNQSE LKVEEMKLLN AASPGSLGLI STEGQQPLSL  360
RSSSSPQPTA SVISKSSWDF PSMGIPPELL LDFRDRTNTT CVTQKNSTAL GTWSELGGLD  420
GKDYWTNMLQ LVGPPCNQPN ATVPTVTKW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121175109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.18e-80myb domain protein 16