PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0102s0022.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 621aa    MW: 68809.5 Da    PI: 4.8663
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0102s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS391.77.9e-1202486171373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           lv+lLlecAea++   ++ + a+L +l++l+sp+gdpmqR+aayf  AL  rla+   e+ ++++  +t e++++ +l a  +++e++P
  Sphfalx0102s0022.1.p 248 LVHLLLECAEAMDG-GHSIVGAILRQLRDLSSPYGDPMQRVAAYFCDALMCRLAKLNGEVDASVSLGHT-EDSMEMSLVANFALNEACP 334
                           68********9986.6789************************************66666666655555.4667777777778****** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                           + kf+hltaNqaIleav  +++vHiiDf+i+qG+QW+aLlqa a+Rp  ++ p++RiTg+  p+ g      l +tg+rL+ fA+ l++
  Sphfalx0102s0022.1.p 335 YSKFAHLTANQAILEAVGDATHVHIIDFGIMQGVQWAALLQAVAARPrgKPLPKIRITGIITPKLGydTPPHLLSTGKRLRAFAALLNI 423
                           ***********************************************655567*********9999989999***************** PP

                  GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                           +++f + ++ +le+++l +L+v+p E++aVn++lql++ll   +++++  + +L+lv+sl+P vv+++e ++++n++ F  rf++al++
  Sphfalx0102s0022.1.p 424 ELQFCP-IVAQLEEVDLGMLHVDPTEKVAVNFMLQLYKLL---GNVSNSLQPLLRLVNSLKPAVVTLTEYDVSLNGPAFQPRFVDALHF 508
                           ******.6999*****************************...777778899************************************* PP

                  GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                           y a+fdsl+a++pr+ ++r +vE ++l++ei+n+vaceg e +erhe  e+W + ++++GF+++pls+++++qa+ ll ++  d +r++
  Sphfalx0102s0022.1.p 509 YCAIFDSLDATMPRNGQDRLNVESMFLAKEIENIVACEGCECKERHECSEQWCNIMQASGFHNAPLSHYTNSQAQQLLWQYC-DNFRLQ 596
                           *********************************************************************************9.55**** PP

                  GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                             sg+l lgW+drpL++vSaW
  Sphfalx0102s0022.1.p 597 PVSGCLSLGWQDRPLITVSAW 617
                           ********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.916222599IPR005202Transcription factor GRAS
PfamPF035142.7E-117248617IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MTPELMRQFT KEHSYEPQKC VRPKQQPPPP PPPQRTVMRR QMGMEMMFPG DKIGGYGIVA  60
DTGGSMCQND RDMVAMEVPA LKLDDFQNIG FGSVHGGGGG GGGIEWLDIM SDLQPCESTK  120
SSALPVVVDA WQDDFSLARN LCIRSDPAKE VGASQPWRVC YDVLPLQSLQ VPEEDYEMPN  180
DLHLLQQIGQ IQEQQQQKQQ HFQQGATEPT RAEIREHPKL EVDAGERETG VDESDHYFGG  240
DCDHGVQLVH LLLECAEAMD GGHSIVGAIL RQLRDLSSPY GDPMQRVAAY FCDALMCRLA  300
KLNGEVDASV SLGHTEDSME MSLVANFALN EACPYSKFAH LTANQAILEA VGDATHVHII  360
DFGIMQGVQW AALLQAVAAR PRGKPLPKIR ITGIITPKLG YDTPPHLLST GKRLRAFAAL  420
LNIELQFCPI VAQLEEVDLG MLHVDPTEKV AVNFMLQLYK LLGNVSNSLQ PLLRLVNSLK  480
PAVVTLTEYD VSLNGPAFQP RFVDALHFYC AIFDSLDATM PRNGQDRLNV ESMFLAKEIE  540
NIVACEGCEC KERHECSEQW CNIMQASGFH NAPLSHYTNS QAQQLLWQYC DNFRLQPVSG  600
CLSLGWQDRP LITVSAWHCT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1012486184375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383318.11e-173SCARECROW-LIKE protein 7-like
TrEMBLA0A2K1K8771e-171A0A2K1K877_PHYPA; Uncharacterized protein
STRINGPP1S362_33V6.11e-172(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.18e-85GRAS family protein