PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0103s0006.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 335aa    MW: 37810.5 Da    PI: 8.693
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0103s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013115137223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +C+ C ++F++  +L+ H +  H
  Sphfalx0103s0006.1.p 115 TCSVCARMFPTTRLLNLHVSEtH 137
                           6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.8287112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089112IPR007087Zinc finger, C2H2
SMARTSM003551.1114137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116137IPR007087Zinc finger, C2H2
SMARTSM003557.5152177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEEQEGIGIE KQQEKMEEEK EKEEGNNAPK MGFAKWVAVR RKFAIDSPFF SAGNVERELL  60
AKQISLEITE EEQFHIGRME EEQIWQVHCP IVGCGTKLRG LGDLEAHYVS RHTATCSVCA  120
RMFPTTRLLN LHVSETHDSF FQAKVARNYS MYECLVEGCA GRFHTDMARL QHLVDKHRFP  180
RSFHFHIKKH ASQRQRQRYR THRTPFPDNG HHQSKQPSMM SEKSAHKKAT TGPTPSLSKG  240
ISEVQQAGTP EDGTGIMDCG SDLETRMNVD ELTTAVSRLS TIAKEADNTP SLVSFGHRRG  300
HRMPFLSGQQ SNPSGRSRGS SHGKQRQTST VHQT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372618.11e-110zinc finger protein 511-like
TrEMBLA0A2K1KNN71e-108A0A2K1KNN7_PHYPA; Uncharacterized protein
STRINGPP1S13_318V6.11e-109(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.14e-70zinc ion binding;nucleic acid binding;zinc ion binding