PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0103s0009.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

HB-other

Protein Properties

Length: 300aa MW: 33956.3 Da PI: 6.2767

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0103s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.6	7.8e-17	17	73	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r++R++ ++ qle Le+++++n+yps + r+ L+k++gL+e+q +vWF rR k+++ Sphfalx0103s0009.1.p 17 RSSRQKKSTFQLELLEKVYAENKYPSIAFRAGLTKEVGLSEKQLQVWFTHRRRKDRR 73 6789***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-18	3	73	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-17	5	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.714	14	74	IPR001356	Homeobox domain
SMART	SM00389	2.3E-15	16	78	IPR001356	Homeobox domain
Pfam	PF00046	3.5E-14	17	73	IPR001356	Homeobox domain
CDD	cd00086	1.44E-14	17	73	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MASDDSSPGA SPEQQKRSSR QKKSTFQLEL LEKVYAENKY PSIAFRAGLT KEVGLSEKQL 60 QVWFTHRRRK DRRDGIEHDQ LTLHGNHNKS EMQSDEPELV KDTQVNLNGR EDVCPKDQYP 120 IATLQDQDDD NDDDVIIIEG WNVMNGSNGK DPKPQDEKMQ KPNTVTRGEI MPQPKEHTKM 180 LQLWRPNPEP EAFISTEANE LVAIAAVEMQ LCEPLREDGP PLGIEFDTLP PGAFQDFTRT 240 KGLHRLELKK GSVQMVTGRA AVPQKSKDLV FLKNKKRQLG DLYGKRLSAQ LSVLQGRFE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	73	RRRKDRRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	1e-16	homeobox-1

Link Out ? help Back to Top
Phytozome	Sphfalx0103s0009.1.p