PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0105s0051.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

DBB

Protein Properties

Length: 243aa MW: 26516.4 Da PI: 6.6184

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0105s0051.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.9	1.7e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 +C+ +e +++lfC ++ lC++C ++ H Sphfalx0105s0051.1.p 4 VCDVCEAAPAHLFCAADEAALCPKCDEKVH 33 8**************************999 PP
2	zf-B_box	23	1.6e-07	54	92	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 + C+ +e+ + +fC +++ lC +C + H g H+ Sphfalx0105s0051.1.p 54 PLCDICEKASAFFFCGIDGTSLCLQCDMDVHTGgkkaHE 92 78*****************************77777786 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.3E-7	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.296	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	3.01E-7	4	47	No hit	No description
Pfam	PF00643	3.0E-6	4	42	IPR000315	B-box-type zinc finger
SMART	SM00336	1.3E-7	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.745	51	96	IPR000315	B-box-type zinc finger
CDD	cd00021	1.91E-6	54	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MRSVCDVCEA APAHLFCAAD EAALCPKCDE KVHACNKLAS RHVRLQLAEA RAIPLCDICE 60 KASAFFFCGI DGTSLCLQCD MDVHTGGKKA HERYLLMAQR VELPVQKPTR DDPADKQPGN 120 NDGTHKQSEQ ANNGQNHVHH HHHHHHHHHH GQENKNERVI TKLGANSDNS IGPAVAIAVG 180 IDVPQSMADK QPASQMFDLN SQPQRSQIQA SHPDEDEDGD RQPVSSDNNH SDVVQGMTAK 240 KG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024387802.1	3e-71	B-box zinc finger protein 18-like
Refseq	XP_024387803.1	3e-71	B-box zinc finger protein 18-like
TrEMBL	A0A176WPN7	1e-73	A0A176WPN7_MARPO; Uncharacterized protein
TrEMBL	A0A2R6X9X2	1e-73	A0A2R6X9X2_MARPO; Uncharacterized protein
STRING	PP1S31_376V6.1	1e-70	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	2e-51	DBB family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0105s0051.1.p