PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0106s0010.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 721aa    MW: 80910.4 Da    PI: 4.9295
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0106s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3342.8e-1023377122373
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevs 88 
                           ++lLl+cA a++++d +  q++++ +++ as +gd++q+l ayf++ L  r ++ +++    lp+ + + + s++ ++al+l  +++v 
  Sphfalx0106s0010.1.p 337 EQLLLHCASAMEANDVTYPQQIVWVMNNVASMEGDSNQKLLAYFLRSLILRASKITPHFI--LPTLQGPLRGSTKIATALELtnYVDVM 423
                           79****************************************************988887..4555555445666666666667***** PP

                  GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgv 174
                           P+++f++++aN aIlea+eg+++vHi+D++ s+++QWp+L++aL++R+egpp++R+ ++ +++++    +  ++e+  rLakfA+  +v
  Sphfalx0106s0010.1.p 424 PWYRFGYIAANGAILEAFEGKDKVHILDLNTSHCMQWPTLIEALSERSEGPPHVRLSVCIAKSPVppqLEVDYQELIVRLAKFARMRNV 512
                           ************************************************************9999898778889**************** PP

                  GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                           pfef++  ++++edl++++++v+++E+laVn+ l+lh++ de+++ e   +rd++L+l+++l+Pk++++++++++++s++++ r+ +a+
  Sphfalx0106s0010.1.p 513 PFEFQL-FHQECEDLHPSMIDVREDEVLAVNCLLRLHYVSDENLNDEPscPRDKILRLIRTLNPKIITLTDEDVNLTSPNLVSRLKSAF 600
                           *****9.699*********************************99998899************************************** PP

                  GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                           +y +  fd+l++ lp++se+r+  E e l+ +i+n+vaceg +r+er+e++ekW +r+++ GF+ +p++ ++a+++ ++l++++  +g 
  Sphfalx0106s0010.1.p 601 NYLWIPFDALHTLLPQDSEQRAHFEGE-LASRIENIVACEGPQRIERMESKEKWVQRMKNEGFEMIPFTGDVATEITHMLSEHSgCWGL 688
                           ***************************.9999****************************************************9**** PP

                  GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373
                           + +++++ l+l+Wk++++ + ++W
  Sphfalx0106s0010.1.p 689 KKDDDEDVLFLTWKGHNVSFSTVW 712
                           ************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.95310692IPR005202Transcription factor GRAS
PfamPF035149.7E-100337712IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MEQERGCEEK NPQKAGQGTD WSQNPDSGDK NFVGSTFCGR RKQLQADVTN MEELHMQRLF  60
SVTNSGINSS QDQFDSPMWT PGLPLQANIL LEENSRSEPV PPVMHSAKNS TGTNDPQSHH  120
QLFEDTSGFQ FSSAPGVGQT LDGQPWHSRC EPPAVAETQT KVFQPDMTSL HASDILSVVD  180
VPRSTGGAIS VTNLCDTALP LDKRPRHTMR HFSEASIQCL KPTSVATVDH DLQNVFVGIE  240
ADRAVSENVE VKFQHHDSDP LLLVHQPNIQ LPGSFISYSE GLERFGIVPE ITPVQSHMER  300
QLEWSPLEGF GAQPCSQAFR VQGLGSLIGS RELTTMEQLL LHCASAMEAN DVTYPQQIVW  360
VMNNVASMEG DSNQKLLAYF LRSLILRASK ITPHFILPTL QGPLRGSTKI ATALELTNYV  420
DVMPWYRFGY IAANGAILEA FEGKDKVHIL DLNTSHCMQW PTLIEALSER SEGPPHVRLS  480
VCIAKSPVPP QLEVDYQELI VRLAKFARMR NVPFEFQLFH QECEDLHPSM IDVREDEVLA  540
VNCLLRLHYV SDENLNDEPS CPRDKILRLI RTLNPKIITL TDEDVNLTSP NLVSRLKSAF  600
NYLWIPFDAL HTLLPQDSEQ RAHFEGELAS RIENIVACEG PQRIERMESK EKWVQRMKNE  660
GFEMIPFTGD VATEITHMLS EHSGCWGLKK DDDEDVLFLT WKGHNVSFST VWVPTEAISF  720
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-6633771534421Protein SHORT-ROOT
5b3h_E3e-6633771534421Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394257.10.0scarecrow-like protein 32
TrEMBLA0A2K1JHL80.0A0A2K1JHL8_PHYPA; Uncharacterized protein
STRINGPP1S36_131V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-114GRAS family protein