PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0106s0024.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 569aa    MW: 62561.9 Da    PI: 6.2422
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0106s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.85.1e-54321731128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeelv++yL++k+ + ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd
  Sphfalx0106s0024.1.p  32 LPPGFRFHPTDEELVTYYLARKLMDPSFKV-HAISEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGMRTNRATEAGYWKATGKD 119
                           79****************************.88***************99999************************************ PP

                   NAM  90 kevlsk..kgel...............vglkktLvfykgrapkgektdWvmheyrl 128
                           k+v+++  +                  +g+kktLvfy grapkgekt+W+mheyr 
  Sphfalx0106s0024.1.p 120 KDVVTTssS--StnparrgasgmtprlIGMKKTLVFYLGRAPKGEKTNWIMHEYRS 173
                           ****98541..3456677777888888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-6124205IPR003441NAC domain
PROSITE profilePS5100557.2832205IPR003441NAC domain
PfamPF023653.6E-2833172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MTICLPGSTG NIIGACTAGD DGKPAMADQP LLPPGFRFHP TDEELVTYYL ARKLMDPSFK  60
VHAISEVDLN KCEPWDLPEK AKMGEKEWYF FSLRDRKYPT GMRTNRATEA GYWKATGKDK  120
DVVTTSSSST NPARRGASGM TPRLIGMKKT LVFYLGRAPK GEKTNWIMHE YRSEDDTITT  180
LHHHHHHHSP RLSRDEWVVC RIFQKNVGSN KKPFFFAGDI RSSSYIASYN QVNDAHSSLP  240
ASRGDLHEEG EEEEEEEDHS PNPTVTDGGV CATDCETCSG MSNKPCYNCQ EQLQETTANI  300
MRNHHHHHQQ QHGDMQIRTT ASSFPWIIRS KSRAGVADHV SGSSVAGVWS PAGIEMMHNS  360
SSTGKPAFFD PSSSTTSHVN MSRLMKQDSP QAAHVMLSKI SSMKFDQQAA AAQQQSNRYR  420
STSTMRTKME AAAAAAHDCC DGEDEAQSTQ RSNYGAAAAT DQYATASWGA VAARANNGAV  480
QALYEDGSSP YDHSPMQVAQ LQSASFSGPD QSSCVSDSLY NCHADQDDED HASELLLYNP  540
NSNHDFHGIS EIATAPVDSV PQSLWTYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-533221120174NAC domain-containing protein 19
3swm_B1e-533221120174NAC domain-containing protein 19
3swm_C1e-533221120174NAC domain-containing protein 19
3swm_D1e-533221120174NAC domain-containing protein 19
3swp_A1e-533221120174NAC domain-containing protein 19
3swp_B1e-533221120174NAC domain-containing protein 19
3swp_C1e-533221120174NAC domain-containing protein 19
3swp_D1e-533221120174NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-74NAC domain containing protein 100