PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0108s0041.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

NAC

Protein Properties

Length: 585aa MW: 63720.5 Da PI: 6.3536

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0108s0041.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.5	3.6e-55	51	189	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv++yL+kkv++ ++ ++i+evd++k+ePwdLp+k+k +e+ewyfFs rd+ky+tg r+nrat++gyWkatgkd Sphfalx0108s0041.1.p 51 LPPGFRFHPTDEELVSYYLAKKVRNGSFAG-HAIAEVDLNKCEPWDLPEKAKMGEREWYFFSLRDRKYPTGMRTNRATDAGYWKATGKD 138 79***********************999.88***********99999******************************** PP NAM 90 kevlsk..kgel...........vglkktLvfykgrapkgektdWvmheyrle 129 ++v+s+ + vg+kktLvfy grapkgekt+W+mheyrle Sphfalx0108s0041.1.p 139 RDVMSSssS--SgssrsrsppqlVGMKKTLVFYMGRAPKGEKTNWIMHEYRLE 189 *8550..345566778888**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.85E-63	47	216	IPR003441	NAC domain
PROSITE profile	PS51005	59.387	51	216	IPR003441	NAC domain
Pfam	PF02365	2.1E-28	52	188	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MTTTTTTTTT AATTGAAACM GTSTCEAVEE WQDIKEEQPA AAAEQQQSGW LPPGFRFHPT 60 DEELVSYYLA KKVRNGSFAG HAIAEVDLNK CEPWDLPEKA KMGEREWYFF SLRDRKYPTG 120 MRTNRATDAG YWKATGKDRD VMSSSSSSGS SRSRSPPQLV GMKKTLVFYM GRAPKGEKTN 180 WIMHEYRLEG DHSCNNNTHH RGIPKDEWVV CRIFQKSVGG KKISGFGYSS DLRFLEAISH 240 YHHHQQQQQQ QQQLQLDETR SSSSIPITAL MDHSPNPTVT TATDDAAAVA AAANLADCET 300 CAAAANNTNY DHTSGCMSNS SSLCCCFHNY SHDNTTILQA SSSPNFFFNH KENTAPAGTW 360 AMKSSAASAK SSGGGGGMMM SLPTTMHSAG TTAATMGGIS GMEMIHQAAG GGALMMNSSS 420 MAKLCPNHEL SFIDPNSAAK SNVSIMPRMD FASSQQQQAA AVAAAAYLHT NLMLLKSLDP 480 VSLRAKAEPY YFEGNDEEED EAQSNSSQKV LSYGWGFEQH HQHPILNEQL NFTATTTTPT 540 TEASSCVTPN LFRYNNFINN NNNNNNNNSK FGFADSSVDL ECMF*

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MTTTTTTTTT AATTGAAACM GTSTCEAVEE WQDIKEEQPA AAAEQQQSGW LPPGFRFHPT  60
DEELVSYYLA KKVRNGSFAG HAIAEVDLNK CEPWDLPEKA KMGEREWYFF SLRDRKYPTG  120
MRTNRATDAG YWKATGKDRD VMSSSSSSGS SRSRSPPQLV GMKKTLVFYM GRAPKGEKTN  180
WIMHEYRLEG DHSCNNNTHH RGIPKDEWVV CRIFQKSVGG KKISGFGYSS DLRFLEAISH  240
YHHHQQQQQQ QQQLQLDETR SSSSIPITAL MDHSPNPTVT TATDDAAAVA AAANLADCET  300
CAAAANNTNY DHTSGCMSNS SSLCCCFHNY SHDNTTILQA SSSPNFFFNH KENTAPAGTW  360
AMKSSAASAK SSGGGGGMMM SLPTTMHSAG TTAATMGGIS GMEMIHQAAG GGALMMNSSS  420
MAKLCPNHEL SFIDPNSAAK SNVSIMPRMD FASSQQQQAA AVAAAAYLHT NLMLLKSLDP  480
VSLRAKAEPY YFEGNDEEED EAQSNSSQKV LSYGWGFEQH HQHPILNEQL NFTATTTTPT  540
TEASSCVTPN LFRYNNFINN NNNNNNNNSK FGFADSSVDL ECMF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-55	51	222	20	174	NAC domain-containing protein 19
3swm_B	1e-55	51	222	20	174	NAC domain-containing protein 19
3swm_C	1e-55	51	222	20	174	NAC domain-containing protein 19
3swm_D	1e-55	51	222	20	174	NAC domain-containing protein 19
3swp_A	1e-55	51	222	20	174	NAC domain-containing protein 19
3swp_B	1e-55	51	222	20	174	NAC domain-containing protein 19
3swp_C	1e-55	51	222	20	174	NAC domain-containing protein 19
3swp_D	1e-55	51	222	20	174	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024372990.1	4e-94	NAC domain-containing protein 46-like
TrEMBL	A0A2K1KN35	9e-93	A0A2K1KN35_PHYPA; Uncharacterized protein
STRING	PP1S227_100V6.1	2e-93	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-76	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Sphfalx0108s0041.1.p