PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0110s0015.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GATA
Protein Properties Length: 337aa    MW: 36787.1 Da    PI: 6.7656
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0110s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.61.1e-15235271135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cg  +  Tp++Rrgp g++tLCnaCGl+++ kgl
  Sphfalx0110s0015.1.p 235 CVHCGIGEklTPMMRRGPAGPRTLCNACGLMWANKGL 271
                           *****99999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.0E-1292127IPR010399Tify domain
PROSITE profilePS5132015.84492127IPR010399Tify domain
PfamPF062001.3E-1494126IPR010399Tify domain
PROSITE profilePS5101712.888160202IPR010402CCT domain
PfamPF062034.4E-15160202IPR010402CCT domain
SMARTSM004013.4E-12229282IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-11232278No hitNo description
Gene3DG3DSA:3.30.50.103.8E-15234276IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.95E-14234277No hitNo description
PROSITE patternPS003440235262IPR000679Zinc finger, GATA-type
PfamPF003201.9E-13235271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSDTDHLVHA QALHAHRIGL HPHNAQVLGK VQGDSDRGHV HYGHGMHHSQ ENGAGTEEPD  60
DDLGDEEGLD EVMMHSDGGG QEEGPVQPLS VRSQGSTQLT LSYQGEVYVF DTVPPEKVQA  120
VLLLLGGREI PPGMSGANMS YHHHHKGLSE LPARMDMPHR LASLTRFREK RKERCFDKKI  180
RYTVRAEVAQ RMQRKKGQFA SARPAGEEAR SANSDGNVVP AQVAGPMSAQ AEAVCVHCGI  240
GEKLTPMMRR GPAGPRTLCN ACGLMWANKG LLRDLSKNLP PSQVNQQPHM LQQQEIIQQQ  300
QEQVATLQQS PSDSPQPGTE VQQGNQDTDA GHNKEK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400206.11e-130GATA transcription factor 28-like isoform X1
RefseqXP_024400207.11e-130GATA transcription factor 28-like isoform X1
SwissprotQ8GXL74e-76GAT24_ARATH; GATA transcription factor 24
TrEMBLA9SRZ21e-127A9SRZ2_PHYPA; Predicted protein
STRINGPP1S68_204V6.11e-129(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-78ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]