PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0110s0072.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 442aa MW: 50741.4 Da PI: 7.9

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0110s0072.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	173	192	3	22
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C+ Cg sF + + +H+r+ Sphfalx0110s0072.1.p 173 CSTCGPSFEDMAKYSSHLRK 192 ******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02992	7.7E-59	11	214	IPR004242	Transposon, En/Spm-like
PROSITE profile	PS50157	8.663	171	203	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MYRCTDLAEL MVWHKEHRSE PGVMRLPVDS LAHKHVESTW PEFKRDPRHV RLGLASDGVS 60 PHSLGGKGRP TSVWPVVVMN YNLPPWLSMK KGFLLLSLII PGPSKVKNLD TYLALVVDEL 120 KTLWDGVWAY DGRKTTGGIP RVFKLRAICM WTMHDYPGFG FVSGLQTQGF KACSTCGPSF 180 EDMAKYSSHL RKIVYLGHTK FLPLGHDMRS DPLLFSSFDM PYGDDRDIPE ATTFAYWRDV 240 ANRVIDLNDS MVFEGSGLTR WGILNNLPYW GELKIRHLLD PMHIEGNVGK AIIKQLYGEK 300 DSNFNREACE DFERHPDVWI TVDPNISIEQ RPSTPWTLTT HERRDFRNRI GEMRFPTGYG 360 TNLQKAFGRD DDHKWPRYLK THDYHRLLQH ILPVAIMGLA SAEVQDALWS LGNLLRWVCS 420 KELFVEEIPR MRVIAAEVCI Y*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MYRCTDLAEL MVWHKEHRSE PGVMRLPVDS LAHKHVESTW PEFKRDPRHV RLGLASDGVS  60
PHSLGGKGRP TSVWPVVVMN YNLPPWLSMK KGFLLLSLII PGPSKVKNLD TYLALVVDEL  120
KTLWDGVWAY DGRKTTGGIP RVFKLRAICM WTMHDYPGFG FVSGLQTQGF KACSTCGPSF  180
EDMAKYSSHL RKIVYLGHTK FLPLGHDMRS DPLLFSSFDM PYGDDRDIPE ATTFAYWRDV  240
ANRVIDLNDS MVFEGSGLTR WGILNNLPYW GELKIRHLLD PMHIEGNVGK AIIKQLYGEK  300
DSNFNREACE DFERHPDVWI TVDPNISIEQ RPSTPWTLTT HERRDFRNRI GEMRFPTGYG  360
TNLQKAFGRD DDHKWPRYLK THDYHRLLQH ILPVAIMGLA SAEVQDALWS LGNLLRWVCS  420
KELFVEEIPR MRVIAAEVCI Y*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Link Out ? help Back to Top
Phytozome	Sphfalx0110s0072.1.p