PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0112s0052.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 513aa    MW: 55415 Da    PI: 5.8698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0112s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.4e-18134182355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           +kGVr++  +grWvAeIr+p     r  +r +lg+f ta eAa+a+++a++ ++g
  Sphfalx0112s0052.1.p 134 FKGVRQRQ-WGRWVAEIREP-----RlrTRMWLGTFSTALEAARAYDEAALTYHG 182
                           8****999.**********9.....445*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.2E-28133191IPR001471AP2/ERF domain
SMARTSM003802.7E-31133196IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-19133191IPR016177DNA-binding domain
PROSITE profilePS5103221.614133190IPR001471AP2/ERF domain
PRINTSPR003671.6E-8134145IPR001471AP2/ERF domain
CDDcd000181.13E-28134191No hitNo description
PfamPF008475.1E-12134182IPR001471AP2/ERF domain
PRINTSPR003671.6E-8156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MNCCCCTYMF SVVSSRQVLQ MTVECSKARR VHSTEARGDL ELERRPEEAD MGIESQISRD  60
GTHNPRRVEP ATTSATIQAA ATHGTKRARG GIKNSSCQGL LSSDLEGPGG LEEPRGCSSR  120
RRRRGGPENG LHTFKGVRQR QWGRWVAEIR EPRLRTRMWL GTFSTALEAA RAYDEAALTY  180
HGPGAHLNLP HERTYAPRGS ASAKIQSTLQ AAPAHDSSCC RWPELPPSTH VLTSEAGFAV  240
NQQPGALLGT ASCNVGADRT VVLSRQQLDP SKLQRDWTDL QLVHLQESSK QLLVPPADAN  300
LITAVIVEHT KELTIADACP SSQPAEEINI PGAAASPAGL LENLLKLDES EEEQESMSCI  360
TSSSTPHHNL LPAAGTSVAT TDMKKSRVMN CGTNSTNTRL LKEECSSSSP GSSTNSCAPQ  420
MTVQDAGTST TFLPEGATSS PRSGAEDHQM QSWESMEMQN PWEDQYALAN GISLPHPPPL  480
DLPSLSLDEP ILDIFCDIPR AMCLDKLLSE ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-16123192674Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-17ERF family protein