PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0113s0019.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 650aa    MW: 69465.6 Da    PI: 7.031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0113s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.4e-20290339255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+taeeAa a++aa+++++g
  Sphfalx0113s0019.1.p 290 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEEAALAYDAAARSFRG 339
                           7********.**********94....45***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.95E-22290348IPR016177DNA-binding domain
SMARTSM003805.4E-36290353IPR001471AP2/ERF domain
PROSITE profilePS5103224.882290347IPR001471AP2/ERF domain
PfamPF008474.3E-14290339IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-32290348IPR001471AP2/ERF domain
CDDcd000181.53E-20290348No hitNo description
PRINTSPR003671.9E-11291302IPR001471AP2/ERF domain
PRINTSPR003671.9E-11313329IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MQIMCRQAVS TTLVKLESSE SPPDSWSFGS PPVRRTTRLP DPLSEVSLMV SALAQPSRST  60
LLDSSSARRG VGANLEEDHN NSSGRRTSIL RAPQAHRLYG DDVADDHLRT GAAAAAAGEL  120
GEPSVGQKRS RTEEEQESFE RLLLWSTQEW VDPERSHAAA WLPVAEAAAA RRRADLAMKT  180
KMMAEAAATA AAMEQQQRGG GAAYSGSSSI QHNTSAFDSA SGKQLPEFSP PEEVGTTVTK  240
YEQMEGQAAA VEMGGEASGL QQQQQVEAAA AGLSEAANQQ AEVHPVKKRR YRGVRQRPWG  300
KWAAEIRDPK KAARVWLGTF DTAEEAALAY DAAARSFRGL RAKLNFPDYP PKDPHPPPPA  360
AAAAAASQVR TSLLRTSSAS SSSSTIASSS LPSSTTSLTV LASSSTLAPS WSCTTTTAAV  420
PSMAAAAAQS LVQQLPSSNT GSWSSASASS SRVATTSSTR TLYNSPAVRM VTTSPPQVSM  480
PLPLQPAPSS NLSPGDQTTY LGHDLVQQQQ QAITYEQQQQ TLWSQRQSRL MSSSAPAPTA  540
LGPGSGYGFP FSYSNVLQQQ QQQQQQQQQQ QQQRQQVMSV EAGGSSHSRL SLRQPELSFD  600
QIFEQTNTGW SPIATTQGPS SNTTTGLLSP GREDFVNTYL NNFQQQEPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22287347263ATERF1
3gcc_A1e-22287347263ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-23ERF family protein