PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0116s0037.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 370aa    MW: 40491.9 Da    PI: 7.2007
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0116s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.34.1e-41261251100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           aCaaCk++rrkC++dC+lapyfp +qpk+f nvhkl+G+snvl++l+ ++++ereda++s+v+eA+ r +dPv+G++gvi+ lq+ql +
  Sphfalx0116s0037.1.p  26 ACAACKHQRRKCTADCPLAPYFPPDQPKRFHNVHKLYGVSNVLRILRMVEPSEREDAVKSIVFEADTREKDPVHGCLGVISLLQNQLTK 114
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkee 100
                           l+++la ++++
  Sphfalx0116s0037.1.p 115 LREDLAGVRDQ 125
                           *****998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.56725126IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-3926122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MTGGAGGLGA GSSASQYSSG TSTNAACAAC KHQRRKCTAD CPLAPYFPPD QPKRFHNVHK  60
LYGVSNVLRI LRMVEPSERE DAVKSIVFEA DTREKDPVHG CLGVISLLQN QLTKLREDLA  120
GVRDQLYRLH HQQQQQQQHT ASILNQSTLY ATTHHHQRSI PAASVSAAHL QLQQQQLYGS  180
TSTSSHANFH DDSTTQANSF FDAKLSLQQP VAAYLHDHSQ LRYNAAASLE STPLHDMFGH  240
QLKVEGVTTD NVLNATLHPT STIASSSVDR SAAAAAGPGM SKLHNYGAAL VQQEQEEDVV  300
VGVVASLQQQ QHRQEHHDSM TMSCGNASLT AHLPRRRSPY SNVQMIEEDD DPHHHQKKKI  360
RDFLQDPSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-34241289113LOB family transfactor Ramosa2.1
5ly0_B2e-34241289113LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.13e-38LOB domain-containing protein 25