PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0116s0076.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

LBD

Protein Properties

Length: 148aa MW: 15513 Da PI: 9.6945

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0116s0076.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.3	1.5e-44	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Cak+Cv+apyfp ++p+kfanvhk+FGasnv k+lk+lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq+ + Sphfalx0116s0076.1.p 8 PCAACKLLRRRCAKGCVFAPYFPPDEPQKFANVHKVFGASNVNKMLKDLPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQVIH 96 7************************************************************************************** PP DUF260 90 lkaelallkee 100 l+a+l +++++ Sphfalx0116s0076.1.p 97 LQAQLTVANAK 107 ***999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.143	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-44	8	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MPGSGMSPCA ACKLLRRRCA KGCVFAPYFP PDEPQKFANV HKVFGASNVN KMLKDLPVHQ 60 RGDAVSSMVY EANARVRDPV YGCVGAISSL QQQVIHLQAQ LTVANAKILS MQMHNQSSHA 120 GPNVVGSLQG LQPGLPTSCA AAAAAVK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-53	1	109	5	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-53	1	109	5	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024397549.1	2e-70	LOB domain-containing protein 4-like
Refseq	XP_024397551.1	2e-70	LOB domain-containing protein 4-like
Refseq	XP_024397552.1	2e-70	LOB domain-containing protein 4-like
Refseq	XP_024397553.1	2e-70	LOB domain-containing protein 4-like
Refseq	XP_024397554.1	2e-70	LOB domain-containing protein 4-like
Swissprot	Q8LBW3	1e-60	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2K1JE80	5e-69	A0A2K1JE80_PHYPA; Uncharacterized protein
STRING	PP1S66_56V6.1	9e-70	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-63	LBD family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0116s0076.1.p

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]