PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0117s0060.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 569aa    MW: 62277.6 Da    PI: 5.9865
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0117s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.26.8e-138625661373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lLl+cA+av+ +++e  + +L++l  las +gdpmqR+a+yf+e+Laar+++s++++y+al++++ +  + ++ l+a+++f+ v+P
  Sphfalx0117s0060.1.p  62 LIQLLLSCANAVACNNMEYSNVFLEQLTLLASLTGDPMQRVATYFMEGLAARITKSWPGVYRALNSTQLP--SIVDMLSARQVFFSVCP 148
                           689**************************************************************99999..59*************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           +lkf++lt NqaIl+a+ege+ vH iD+++s ++QW+aLlqaL+ Rp+gpp+lRiTgv++    ++  le+tg+rL+  Ae+l++pf+f
  Sphfalx0117s0060.1.p 149 YLKFAFLTVNQAILDAMEGEKVVHLIDLEASDPVQWLALLQALSVRPGGPPHLRITGVSE----RRAVLEQTGQRLSIEAEKLDIPFQF 233
                           ************************************************************....9************************ PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll..................................................... 214
                           ++ v+ +le+l++e Lrvk+gEa+a+++v++lh ll                                                     
  Sphfalx0117s0060.1.p 234 HP-VHAQLENLDIELLRVKTGEAVAISSVMRLHPLLakdsrfsgsggqpssfdgshgrvgstrgqtfqgvghfrgegnssvgtcsqpqa 321
                           **.7999********************************************************************************** PP

                  GRAS 215 ......................................................................................des 217
                                                                                                                 +  
  Sphfalx0117s0060.1.p 322 qvrdcavkrprevsdeevelvhgsvgdsrfdgssagvhadgelattgkscvttdggltlverdrptsnlvsphaqeetcvvateesA-- 408
                           **********************************************************************************96542.. PP

                  GRAS 218 vsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                            + e    ++d+vL++++ lsPkv+vvveqe++hn++++lerf+eal+yy a+fdsl+++lp++  er+++E++l+g+ei+n+vaceg 
  Sphfalx0117s0060.1.p 409 -AHEAsggAIDQVLRTLRCLSPKVMVVVEQESSHNGPTLLERFIEALHYYCAMFDSLDSTLPQQCPERVTLEKHLFGQEIKNIVACEGV 496
                           .3333345899****************************************************************************** PP

                  GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                           er+erhe+lekW++r+e+aGF+ ++ls+ ++ qak+ll+ ++ dgyr+ e++g+l+l+W+d pL+s+SaW
  Sphfalx0117s0060.1.p 497 ERVERHEKLEKWKKRMENAGFQMLALSQPTVLQAKRLLHCYACDGYRLLEKDGCLTLCWQDTPLYSASAW 566
                           ********************************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.99736547IPR005202Transcription factor GRAS
PfamPF035142.4E-13562566IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MPGMIREDTP SLSLSSSVSA STQSFSSLSN LPPHHTALSS VNGPTQHLWL QELRSEERGL  60
YLIQLLLSCA NAVACNNMEY SNVFLEQLTL LASLTGDPMQ RVATYFMEGL AARITKSWPG  120
VYRALNSTQL PSIVDMLSAR QVFFSVCPYL KFAFLTVNQA ILDAMEGEKV VHLIDLEASD  180
PVQWLALLQA LSVRPGGPPH LRITGVSERR AVLEQTGQRL SIEAEKLDIP FQFHPVHAQL  240
ENLDIELLRV KTGEAVAISS VMRLHPLLAK DSRFSGSGGQ PSSFDGSHGR VGSTRGQTFQ  300
GVGHFRGEGN SSVGTCSQPQ AQVRDCAVKR PREVSDEEVE LVHGSVGDSR FDGSSAGVHA  360
DGELATTGKS CVTTDGGLTL VERDRPTSNL VSPHAQEETC VVATEESAAH EASGGAIDQV  420
LRTLRCLSPK VMVVVEQESS HNGPTLLERF IEALHYYCAM FDSLDSTLPQ QCPERVTLEK  480
HLFGQEIKNI VACEGVERVE RHEKLEKWKK RMENAGFQML ALSQPTVLQA KRLLHCYACD  540
GYRLLEKDGC LTLCWQDTPL YSASAWHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-45435661377Protein SCARECROW
5b3h_D1e-45435661377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381004.10.0scarecrow-like protein 3
RefseqXP_024381005.10.0scarecrow-like protein 3
RefseqXP_024381006.10.0scarecrow-like protein 3
SwissprotQ9LPR86e-86SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2K1K9U30.0A0A2K1K9U3_PHYPA; Uncharacterized protein
STRINGPP1S130_153V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-86scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]