PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0119s0060.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 541aa    MW: 58625.8 Da    PI: 6.1133
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0119s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.6e-121461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+ Ed +l  ++k +G g+W+t ++  g+ R++k+ ++rw +yl
  Sphfalx0119s0060.1.p 14 KGPWTEAEDRILSAYIKAHGAGCWRTLPKAAGLARCGKSSRLRWINYL 61
                          79********************************************97 PP
2Myb_DNA-binding49.21.2e-1567112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+ +++Ed+l++ ++ +lG++ W++Ia +++ gRt++++k++w+++l
  Sphfalx0119s0060.1.p  67 RGNISPDEDDLIITLHSLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 112
                           7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.969961IPR017930Myb domain
SuperFamilySSF466891.33E-2511108IPR009057Homeodomain-like
SMARTSM007171.4E-81363IPR001005SANT/Myb domain
PfamPF002491.1E-91461IPR001005SANT/Myb domain
CDDcd001673.63E-71661No hitNo description
PROSITE profilePS5129426.32662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2565117IPR009057Homeodomain-like
SMARTSM007176.3E-1666114IPR001005SANT/Myb domain
PfamPF002493.3E-1467112IPR001005SANT/Myb domain
CDDcd001672.23E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1900384Biological Processregulation of flavonol biosynthetic process
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MGRAPCCDKQ GINKGPWTEA EDRILSAYIK AHGAGCWRTL PKAAGLARCG KSSRLRWINY  60
LRPDLKRGNI SPDEDDLIIT LHSLLGNRWS LIAGRIPGRT DNEIKNYWNT HLKRKLKSMG  120
LDPSGKHKLP SFPFFSTSST TSLAQENSSS HVNQAPKDES SLEPEEETPH VLHQNNSSPS  180
SLTSPPQFHD IKEIKKDRLS IMMRTAQVMA THSTMRTATH NSTEADQSKA LSFGNFSSEE  240
DSDRSSSLIP DPGQAAVAAR SSWEPTLENI VKAAQGQAPL YPSSPDSVLS TCKGLHKDLN  300
HHKSQASLVA PGHSIPQMVV AGATSMEITQ VPLHHHLPVR SNSNPLGIMV SEYNMPSTCS  360
TDFSTDASSL AEQNYSSSWN NSTCIELVHS ESSSGFYRND ASFNCNDSDS GYFNKSISGE  420
SLRGGAAAAT TVLDSAAAAA PADQDPYYTL MANLSSLKYT NTDQLSSISS SGSSHCGGYS  480
SPLENLFSPF PDYTPDSDDL QHEMQASLLG DHAWGGNLQP SHSSMDFLSN DDSLWEPCIM  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141187110B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKRKLKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-67myb domain protein 7