PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0122s0032.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 937aa MW: 101445 Da PI: 5.5669

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0122s0032.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	347.2	2.6e-106	522	931	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.............sse 76 lv+lLl cAea+++ d+ +a+L+rl+ +sp+gdpm+R+a+yf+ AL rla++ + ++ ++ + e Sphfalx0122s0032.1.p 522 LVHLLLGCAEAIEACDFDVGHAVLTRLRAKSSPHGDPMKRIAFYFADALGDRLAQEFAAMNSSRTTALIYKPAdsaaitpatasssALE 610 68*************************************************996655554433322211111223444434333334 PP GRAS 77 elaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetger 164 + a+++ +e+ P+ kf+h+t NqaIlea+ ++ ++Hi+D+ i qGlQWp ++qaLa R++gpp lRiT++g + +l++tg+r Sphfalx0122s0032.1.p 611 SDLAYQASYELLPFEKFTHFTGNQAILEAMLEHPKLHIVDLAIRQGLQWPGFIQALAVRRGGPPrLLRITAIGL----DVSALQQTGKR 695 44455889************************************************8888689***....9****** PP GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 La+fAe+l+vpfe+ v v ++le+le ++rv+ +E laVn+ lh+ll+ ++ + + +vL +++ l+P vv + e ea+hn++sF Sphfalx0122s0032.1.p 696 LAHFAESLQVPFEYCV-VPESLENLEQGKIRVEADEILAVNCCSVLHSLLRFKHGVLE---NVLCTIRALNPVVVSLLEVEANHNAPSF 780 ***********9.7****************************77766666...8*********************** PP GRAS 254 lerflealeyysalfdsleak.............lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329 ++rf+eal+yysalfdslea+ ++++e r +E+++++++i++++aceg++rr+rh + e+Wr+ +++aGF++ pl Sphfalx0122s0032.1.p 781 MARFVEALHYYSALFDSLEATdhdragrlqhscyCSSTTERRLQIEKFCFAPQIQDIIACEGNHRRARHVRWETWRSFFTDAGFRNSPL 869 **************9999*******999999********************************************** PP GRAS 330 sekaakqaklllrkvksdgyrve..ee................sgslvlgWkdrpLvsvSaW 373 s +aa+qa+lll +++g +g l+lgW+d p+++vS+W Sphfalx0122s0032.1.p 870 SVYAADQAQLLLGVLYNNGQAAAlpAAvgdnnmlmpykltaldNGVLTLGWQDTPVTTVSSW 931 ************99966664411444467777777778799999************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.681	496	894	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.1E-104	522	931	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 937 aa Download sequence Send to blast
MVARAAAAHY STNSSPREQN IVVQRVMLEA AGGTVEPGAA AGGHVQYGGC SSRRMLQQRH 60 QQGSGIHSYH HRYAGLKKSP SLLNSVMDAV TLQVSCSNNH NHEKVQMMGL DPVAAEDDDV 120 AAQLMEPTSV LDLMQSTSRP SRSYSSSASL SSQHSFSSSD GSSPVMSTTQ LLLQQVEEPH 180 HAAAAAHPDY NPRAAAALSV FKEEHLHAVV NQQLPASTAD CMSSISDSDI ANWMECLMDP 240 NLAFNVLPEF AGSLDDQSSC ADGLDFSAAA CNQMKLVEWN DIAQFSSGIG FENFEMSCLQ 300 DKSAAMSHDY SGTQSFSSDL HEFPVAPAGT SRCEHETMLA ATDQSAAAGS CLLQDEAPMF 360 VVPGQFSEVW FPESMKQKLP HRLTNTRAAV QQFSQGALPP STTRAALKST KADHGASFAS 420 MPMQAESTTI VPTSELLKLL STQQQSSALD QQIAPCSIIG DKKSLAGALA HEAPPLQQYP 480 TSPSEDSLIC NDRISPAVAP VLQFPSGAQN LILQEENTGL DLVHLLLGCA EAIEACDFDV 540 GHAVLTRLRA KSSPHGDPMK RIAFYFADAL GDRLAQEFAA MNSSRTTALI YKPADSAAIT 600 PATASSSALE SDLAYQASYE LLPFEKFTHF TGNQAILEAM LEHPKLHIVD LAIRQGLQWP 660 GFIQALAVRR GGPPRLLRIT AIGLDVSALQ QTGKRLAHFA ESLQVPFEYC VVPESLENLE 720 QGKIRVEADE ILAVNCCSVL HSLLRFKHGV LENVLCTIRA LNPVVVSLLE VEANHNAPSF 780 MARFVEALHY YSALFDSLEA TDHDRAGRLQ HSCYCSSTTE RRLQIEKFCF APQIQDIIAC 840 EGNHRRARHV RWETWRSFFT DAGFRNSPLS VYAADQAQLL LGVLYNNGQA AALPAAVGDN 900 NMLMPYKLTA LDNGVLTLGW QDTPVTTVSS WIRTSC*

Sequence ? help Back to Top

Protein Sequence Length: 937 aa Download sequence Send to blast

MVARAAAAHY STNSSPREQN IVVQRVMLEA AGGTVEPGAA AGGHVQYGGC SSRRMLQQRH  60
QQGSGIHSYH HRYAGLKKSP SLLNSVMDAV TLQVSCSNNH NHEKVQMMGL DPVAAEDDDV  120
AAQLMEPTSV LDLMQSTSRP SRSYSSSASL SSQHSFSSSD GSSPVMSTTQ LLLQQVEEPH  180
HAAAAAHPDY NPRAAAALSV FKEEHLHAVV NQQLPASTAD CMSSISDSDI ANWMECLMDP  240
NLAFNVLPEF AGSLDDQSSC ADGLDFSAAA CNQMKLVEWN DIAQFSSGIG FENFEMSCLQ  300
DKSAAMSHDY SGTQSFSSDL HEFPVAPAGT SRCEHETMLA ATDQSAAAGS CLLQDEAPMF  360
VVPGQFSEVW FPESMKQKLP HRLTNTRAAV QQFSQGALPP STTRAALKST KADHGASFAS  420
MPMQAESTTI VPTSELLKLL STQQQSSALD QQIAPCSIIG DKKSLAGALA HEAPPLQQYP  480
TSPSEDSLIC NDRISPAVAP VLQFPSGAQN LILQEENTGL DLVHLLLGCA EAIEACDFDV  540
GHAVLTRLRA KSSPHGDPMK RIAFYFADAL GDRLAQEFAA MNSSRTTALI YKPADSAAIT  600
PATASSSALE SDLAYQASYE LLPFEKFTHF TGNQAILEAM LEHPKLHIVD LAIRQGLQWP  660
GFIQALAVRR GGPPRLLRIT AIGLDVSALQ QTGKRLAHFA ESLQVPFEYC VVPESLENLE  720
QGKIRVEADE ILAVNCCSVL HSLLRFKHGV LENVLCTIRA LNPVVVSLLE VEANHNAPSF  780
MARFVEALHY YSALFDSLEA TDHDRAGRLQ HSCYCSSTTE RRLQIEKFCF APQIQDIIAC  840
EGNHRRARHV RWETWRSFFT DAGFRNSPLS VYAADQAQLL LGVLYNNGQA AALPAAVGDN  900
NMLMPYKLTA LDNGVLTLGW QDTPVTTVSS WIRTSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-65	529	931	26	378	Protein SCARECROW
5b3h_A	2e-65	529	931	25	377	Protein SCARECROW
5b3h_D	2e-65	529	931	25	377	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-65	RGA-like 2

Link Out ? help Back to Top
Phytozome	Sphfalx0122s0032.1.p