PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0124s0022.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 370aa    MW: 38472.1 Da    PI: 6.7915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0124s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-1794143255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr ++ +g Wv eIr p++   ++r++lg+f ta++Aa+a++aa+++l+g
  Sphfalx0124s0022.1.p  94 LYRGVRKRP-WGIWVTEIRSPKK---KTRIWLGSFATADMAARAYDAAALALRG 143
                           69*******.**********854...6*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1293143IPR001471AP2/ERF domain
CDDcd000188.31E-1593153No hitNo description
SuperFamilySSF541711.5E-1994153IPR016177DNA-binding domain
PROSITE profilePS5103223.14394151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-3094153IPR001471AP2/ERF domain
SMARTSM003804.8E-3494157IPR001471AP2/ERF domain
PRINTSPR003673.4E-1295106IPR001471AP2/ERF domain
PRINTSPR003673.4E-12133153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEDATSPLSY SGADAGCVQE SAAGLGPEDW DPGSSSQEPS STKDEESPAS RSDELNSGKQ  60
AEVETSSCSP QQNFTDARKR TKQVSAAKDT RHPLYRGVRK RPWGIWVTEI RSPKKKTRIW  120
LGSFATADMA ARAYDAAALA LRGPAALLNF PESAHSLPRP VDLSDKAIQA AAAAAANIPP  180
SPPVSPQQAQ RSGTAGEPGS LELLQPMSET GNASRVERKQ PARSIRVSKS SPRGSRSTPA  240
AAEASDVPSG RSWTQTPILS LDTTVVPQAS DETSQTENNT VASYMSSRDA VHGTEAGQEN  300
TCTVGGGSSS SGSMPQAHQA GVVEDAAGDQ AQGCSGPSRN TLSGLNAQSH VHGISRTITI  360
SAGRKVLQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-18921521273Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-19ERF family protein