PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0124s0031.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NF-YA
Protein Properties Length: 293aa    MW: 31410.7 Da    PI: 7.8405
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0124s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.52.2e-33125181158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh+hAlrR+Rg+gGrF
  Sphfalx0124s0031.1.p 125 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IKSRKPYLHESRHQHALRRARGCGGRF 181
                           69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.0E-38123184IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.587124184IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.2E-28126181IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.2E-24127149IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860129149IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.2E-24158181IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MQAPLSASPD APDEAAARPP RMQAITPQTG FEGGSVDEQQ QQQQQQQQQQ QVLPTGIPAP  60
GEYLLPHTQL ELGHSMARSA YPYADPYFGG IALAYGTQAM GLQIHPHMLG VQQARMPLPS  120
EMMEEEPVYV NAKQYHGILR RRQSRAKAES ENKLIKSRKP YLHESRHQHA LRRARGCGGR  180
FLNKKVKEGD QQGNSDNNRS CEGQSSQGRN ASDPQASNSG QGMMGSQGEA AGYHPAMLVP  240
SGNNAYQNHH PPGPLHSSAF HPLPGASDAG AGGNSGNNIV SSGPQETVVS TQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-21125188265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388759.11e-121nuclear transcription factor Y subunit A-9-like isoform X2
SwissprotQ945M96e-40NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A2K1JVK41e-118A0A2K1JVK4_PHYPA; Uncharacterized protein
STRINGPP1S31_299V6.11e-118(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-35nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]