PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0126s0030.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 505aa    MW: 54494.6 Da    PI: 5.0035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0126s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161663148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT  Ed +lv +v ++G g+W+++ ++ g+ R++k+c++rw ++l
  Sphfalx0126s0030.1.p 16 KGPWTSAEDAILVSYVSKHGEGNWNSVQKHSGLFRCGKSCRLRWANHL 63
                          79******************************************9986 PP
2Myb_DNA-binding46.39.8e-1569112146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g+++++E+  +v+++ ++G++ W++ a+ ++ gRt++++k++w++
  Sphfalx0126s0030.1.p  69 KGAFSPDEERNIVELHSKFGNK-WARMAAQLP-GRTDNEIKNYWNT 112
                           799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9251163IPR017930Myb domain
SuperFamilySSF466894.49E-2913110IPR009057Homeodomain-like
SMARTSM007173.6E-141565IPR001005SANT/Myb domain
PfamPF002491.0E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-231770IPR009057Homeodomain-like
CDDcd001676.73E-111863No hitNo description
PROSITE profilePS5129424.51464118IPR017930Myb domain
SMARTSM007171.1E-1468116IPR001005SANT/Myb domain
PfamPF002499.0E-1469112IPR001005SANT/Myb domain
CDDcd001671.42E-1071112No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2471118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDLPEEIFVD AGNLKKGPWT SAEDAILVSY VSKHGEGNWN SVQKHSGLFR CGKSCRLRWA  60
NHLRPNLKKG AFSPDEERNI VELHSKFGNK WARMAAQLPG RTDNEIKNYW NTRIKRRMRA  120
GLPVYPLDIP KCASAAQYCY KQEDGRKMGT RVDSESEFAS SLTLGEPLSC QLNSLHGGHQ  180
VRSFYPITSI SDDPPLSTVV ANEGLGGVGK GIGSLLPNIK QVCLSPYGET DSRDGSVLFS  240
QLSDVSSETL HAGSYTKVSQ TCTHNSVRST IASLFTGEPD PFIVPYDGAN GFLDMPFHSF  300
APSPSLKLEL PLSQLAESAG TCGSAITSPL MSLPLSRQLP LEADSFGSNA SDFLEALMKE  360
AHPTIGLDQV RTDLIDQLLV LTSGNMSTEV AALIGIDKGR WGVDINPVAT LEACAFGHRE  420
DVSQNCCIGC VAEPAIQPLL PSVEATSVSA SQVAGPRVDD ILAEVPSGLC MDENYVPLLD  480
FPSSDVVPEW LSPPSWGYPM HLPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31131184108B-MYB
1h8a_C5e-311411825128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.14e-67myb domain protein 33