PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0128s0026.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 1020aa    MW: 110236 Da    PI: 6.1085
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0128s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.8e-1755101148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g WT+eEde l +av++l g++Wk+Ia+ +   Rt+ qc +rwqk+l
  Sphfalx0128s0026.1.p  55 KGGWTPEEDEVLRRAVQLLKGKNWKKIAEFFT-DRTDVQCLHRWQKVL 101
                           688****************************9.************986 PP
2Myb_DNA-binding52.71e-16107153148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+WT+ Ed++++++v+++G   W+ Ia+ ++ gR +kqc++rw+++l
  Sphfalx0128s0026.1.p 107 KGAWTKFEDDRIIELVAKHGATKWSMIAQGLP-GRIGKQCRERWHNHL 153
                           79******************************.*************97 PP
3Myb_DNA-binding54.13.6e-17159203147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r +WT+ Ed+ l+ a++++G++ W  Ia+ ++ gRt++++k++w++ 
  Sphfalx0128s0026.1.p 159 REAWTEHEDLTLISAHQLYGNK-WVEIAKLLP-GRTDNSIKNHWHST 203
                           789*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.20550101IPR017930Myb domain
SuperFamilySSF466892.44E-1753115IPR009057Homeodomain-like
SMARTSM007171.5E-1454103IPR001005SANT/Myb domain
PfamPF002499.4E-1555101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2057109IPR009057Homeodomain-like
CDDcd001675.73E-1358101No hitNo description
PROSITE profilePS5129430.382102157IPR017930Myb domain
SuperFamilySSF466896.36E-30104200IPR009057Homeodomain-like
SMARTSM007174.2E-14106155IPR001005SANT/Myb domain
PfamPF002491.5E-15107153IPR001005SANT/Myb domain
CDDcd001675.79E-13109153No hitNo description
Gene3DG3DSA:1.10.10.603.5E-24110156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-23157207IPR009057Homeodomain-like
PROSITE profilePS5129421.907158208IPR017930Myb domain
SMARTSM007171.7E-16158206IPR001005SANT/Myb domain
PfamPF002495.7E-15159202IPR001005SANT/Myb domain
CDDcd001674.97E-12161201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1020 aa     Download sequence    Send to blast
MDARGNTNGS CTSTENMQQR SSACSSGAES DDDASRDHLP PVHGRTGGPT RRSSKGGWTP  60
EEDEVLRRAV QLLKGKNWKK IAEFFTDRTD VQCLHRWQKV LNPDLVKGAW TKFEDDRIIE  120
LVAKHGATKW SMIAQGLPGR IGKQCRERWH NHLNPDIKRE AWTEHEDLTL ISAHQLYGNK  180
WVEIAKLLPG RTDNSIKNHW HSTMKKRADP EKATDPVSKA LAAYQAQQDV MNPAGSSLHL  240
EPSMNTMGRV DPPASKATTS YQAFGCIQEM CATPSTNGPL QTAAPALQFQ HSSLRAWVES  300
GPLSTMDLPN HPSFSPVGAA SPSSQGLPGM TIPVSLSQLG SFFSTSSMSL VSVNSIHSTA  360
PLNSRPAPTS GQSLAIVDTQ PQNFESMKGG LSKQLHIDCK DAEQCHAQGE ELAGKQVLGH  420
QDELSITANK AVSQYNNCET CALTELDLET DRDVDASMES EMGGLFYEPP QFPCSSESPF  480
LSYDLIQNCQ SLQAYSPLGI RQMIVSMGNC ITTPPYHLSE SPFQGNSPQA RLRSAAQSFS  540
GSPSILRKRA HQLMIPAKQG STGIKKDRQV GPSWTSPRIK EKKEIAAGLL TCSVKTPDDT  600
VQGNPTKDTV EWTARQATCQ ARTALFVSPS KHFGSVSNAP NVPQGLHPNS ESTSQDYTND  660
RNGGVEYSSP PVYAQDCRQV ATCSTGMCEA AGGKYIERRS HGFNLEYQSR SSMWGDSEQA  720
MKEGVVCAEQ TKNGQGQLHF LLEANTLPMP LVVCKENCGD STVFGGKHMF GDLRASCEAG  780
VVSSGTLISG AVISEVPDER EMMSPGAMST FAVTCASPGG AVLQGTPGND WLAEFESINF  840
ASVMSDSSFA SPTAIWGEHW RVDPFASAEK EISISFEEGS EVPVGGREIN ALGIMESLNG  900
DNVPGNCEAE EVFTKLPSAV CMASPHSQYR TQRDLGQSAH DCKENLKKVS TVDGETSSSF  960
INWLVPFQVD NFSPESGIAR TPVRVSTLGL NDGSGKTQVV SGGSCDRFSP STYLLKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-66552076158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-66552076158MYB PROTO-ONCOGENE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPP1S120_159V6.11e-123(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.22e-83myb domain protein 3r-4