PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0129s0025.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 546aa    MW: 60061.3 Da    PI: 4.56
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0129s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2681.8e-21215265155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++y+GVr+++ +g+W+AeIrd +     +  r +lg+++taeeAa+a+++a+++++g
  Sphfalx0129s0025.1.p 215 PKYRGVRQRP-WGKWAAEIRDpF-----KgLRLWLGTYDTAEEAARAYDKAAREIRG 265
                           79********.**********55.....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.98E-35215273No hitNo description
PfamPF008472.0E-14215265IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-31216273IPR001471AP2/ERF domain
PROSITE profilePS5103224.395216273IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23216273IPR016177DNA-binding domain
SMARTSM003801.8E-35216279IPR001471AP2/ERF domain
PRINTSPR003674.2E-11217228IPR001471AP2/ERF domain
PRINTSPR003674.2E-11239255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MPGPQSFSSR SLTPSHKCST QLPKISKKIV KRELLTDSEE DEEFNDSTRP KKLVRVICTD  60
PDATDSSSDE EEGNRLIRRC YNHSTGLFQF RGESAHSSFS DSEDEAELPS YYSVFTATAM  120
KCGLNCASSD LATTRSEIKE PRTHESLKSL CQTKKSPELR KQLVAKKSSK KDRSEKSSIV  180
ATRLSASLIT SKTGSHVEAA QLLKTGEGRQ GSKPPKYRGV RQRPWGKWAA EIRDPFKGLR  240
LWLGTYDTAE EAARAYDKAA REIRGPQAQT NFESWVQVQS DMPSAAAGAD LLREEAAEIK  300
LVKNLVENRS GMPEGHQQQP VELHSDMTTI HYQLEDQPSH TPATRTSAGS TEIPSSFCGL  360
NNVESRGNAA DSVGVETEKC SEIYDQSGLF ACLPSSSENS MCDQFLRAGE SEDSFQGCLS  420
ETAVCDLPQE RIEESCASTE GLQVSDHCTS DPEPHLIDQV MAENNILQVE HNMSIDILSH  480
DYFEDTDFIF DMSSCLQGEP LMDFSAISFD PLDDEAGGDI ADLVFDDNRT NNWFAAAASD  540
IPAVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20217272359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-19cytokinin response factor 2