PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0131s0029.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 646aa    MW: 70446 Da    PI: 5.9812
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0131s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-181461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEde+lv++++ +G g+W+++++  g+ R++k+c++rw +yl
  Sphfalx0131s0029.1.p 14 KGLWSPEEDERLVQYITTYGHGCWSAVPKQAGLQRCGKSCRLRWINYL 61
                          678*******************************************97 PP
2Myb_DNA-binding42.81.2e-1367110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg ++  E++l++d+++ lG++ W+ Ia  ++ gRt++++k++w++
  Sphfalx0131s0029.1.p  67 RGGFSSAEEKLIIDLHAGLGNR-WSQIATQLP-GRTDNEIKNFWNS 110
                           78899*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-26664IPR009057Homeodomain-like
PROSITE profilePS5129424.819965IPR017930Myb domain
SuperFamilySSF466899.56E-2811108IPR009057Homeodomain-like
SMARTSM007172.9E-131363IPR001005SANT/Myb domain
PfamPF002492.1E-151461IPR001005SANT/Myb domain
CDDcd001673.88E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129418.18966116IPR017930Myb domain
SMARTSM007175.8E-1266114IPR001005SANT/Myb domain
PfamPF002498.5E-1267110IPR001005SANT/Myb domain
CDDcd001671.06E-870109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MGRHSCCHKQ KLKKGLWSPE EDERLVQYIT TYGHGCWSAV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGGF SSAEEKLIID LHAGLGNRWS QIATQLPGRT DNEIKNFWNS CIKKKLRQVG  120
IDPNTHELIG ATTSAASHVA NPGNSATSNP QYNKLVDTGS SAITMQSSIG NFNSRFVINQ  180
DFKAAESQGN GSLLVNQVQG NYQGLSTMQN MLFGPPARNS QLEMNSGKKF ENEYNRGRFT  240
EHNFQGQSAF QGSNTSPALC TDNLLERLML SSKQSGMQYL TPKVPTLQGF EPMRNCTNLI  300
QNRDPTHDEA GRSAIKAESV TQCPTTMVPN AFNPVFWLLQ GSGNGSSQPD QSSAGLGVHP  360
PHDLDEILPP LKQAGTIILT SEGDSISAQS GRVCQEIHQM KSGHFGHPDF YASTVDQDHG  420
DLSSITASIT QGKDRSGGIP SHQLQFFLSS MLEDSRGELH QEVADMQNNS NEMSSQADGL  480
GRQVTHNQWD SSISTSTSNN REATPSTTNT TTQQSGLFES NLMWANFQEK GESDHQQDQV  540
VAETSDIVSG DSDQISAPFL PESEGDTVMQ WCSNLTTLPG PGDDHQQPPP APSASGGPPV  600
PLAMISPWQM HQAGPPDLYD TRTAPVAAPY MSQELRRMAA VLDQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.33e-78myb domain protein 55