PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0131s0035.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 709aa    MW: 77185.5 Da    PI: 4.6359
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0131s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-20264313255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdps+     r +lg+++taeeAa a+++a++ ++g
  Sphfalx0131s0035.1.p 264 KYRGVRQRP-WGKWAAEIRDPSK---GVRLWLGTYDTAEEAALAYDKAARDIRG 313
                           8********.**********965...4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.459264321IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-31264321IPR001471AP2/ERF domain
CDDcd000184.41E-33264321No hitNo description
PfamPF008471.8E-13264313IPR001471AP2/ERF domain
SMARTSM003806.7E-38264327IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-22264321IPR016177DNA-binding domain
PRINTSPR003671.2E-10265276IPR001471AP2/ERF domain
PRINTSPR003671.2E-10287303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MMMISSSSSS RKVVKRELMT DSEDDEWGDA GMTRGRNHHR PKRVRVICTD PDATDSSSDD  60
EDMLMTSKFR CSTSTSTANF FTTATSQPAT SRFQQQQQSR RRRRQHAGGV QLQVIDVQFP  120
TSLDHAAAAN SESSSSSSSS DSEDEEEAAD VPSYHSIFTA TAMKCGLNCA SSLGRAPTTT  180
TASAAFTTFV EKEPSCKKKK KKKQPPEEKP VLPKRQSSKK DKSHESVAAA LSSATLQHQG  240
QQKKRPGEDD AAAPGAKPPP PPHKYRGVRQ RPWGKWAAEI RDPSKGVRLW LGTYDTAEEA  300
ALAYDKAARD IRGPLAQTNF QGAAVGSEVP PSSAAASVSA MDPAASCQTA AVEDHKPVQQ  360
QQQQKKKKKT TTTTTANKPE RRKAEVVDRC QQLPSQRDIP ESQLKESNNN VSVTTMTRSG  420
MGCEQMVNTR RKGGGGGLDA AAAQQVSVAT TVVVAAAEVD ECCSDIYDNE SSLDQLGQFH  480
GFPHHPAAAA DDDDDQECSF FVCSPSSVID GCMSNFSDHS LCSFPESISS EVEEQQLVCD  540
QFLSGDDDSF HGCLSECTVS LPQERTEEED CAAEQQQQHL QQQLRQQQQY QLLQLHMQQQ  600
QVRDHSGSNS DLEMATEDRD MCEEDAIDLS QAYFEDVDFI FDMSRNQCDG AGGAAQEGDN  660
SSGSSGELMM DFSAISFDLL DDGDDIADLV FLDSKTNNWF GTNDISVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21265320359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.25e-18cytokinin response factor 2