PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0133s0037.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family M-type_MADS
Protein Properties Length: 90aa    MW: 10319.9 Da    PI: 5.9264
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0133s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.81.8e-202272151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krien +  qvtfsk r  +lKKA+EL vLCdaeva iif + gkl+ ++s
  Sphfalx0133s0037.1.p 22 KRIENPTSMQVTFSKCRGALLKKAHELVVLCDAEVAFIIFFNIGKLFKFAS 72
                          79**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.4181474IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-291473IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-231478IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-241636IPR002100Transcription factor, MADS-box
PfamPF003199.5E-192370IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-243651IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-245172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MDPLRQEEEE EEDMGRGKIE IKRIENPTSM QVTFSKCRGA LLKKAHELVV LCDAEVAFII  60
FFNIGKLFKF ASSGSFNIKM RKKEEQDYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-161473160MEF2C
5f28_B5e-161473160MEF2C
5f28_C5e-161473160MEF2C
5f28_D5e-161473160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373424.11e-26MADS-box protein GGM13-like isoform X1
SwissprotQ9XGJ42e-24GGM13_GNEGN; MADS-box protein GGM13
TrEMBLA0T1Z31e-27A0T1Z3_PHYPA; MADS-domain transcription factor (Fragment)
STRINGPP1S171_71V6.11e-28(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.31e-24MIKC_MADS family protein
Publications ? help Back to Top
  1. Winter KU, et al.
    MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants.
    Proc. Natl. Acad. Sci. U.S.A., 1999. 96(13): p. 7342-7
    [PMID:10377416]