PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0135s0032.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 470aa    MW: 51854.6 Da    PI: 5.2638
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0135s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.85.4e-33541931128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 
                           lp+G+rF+P+deel+  +L++k+ +++        ++ ++++   +i+ ++P++Lp  vk++ ++++fF++ + +y+tg+rk+r+++  
  Sphfalx0135s0032.1.p  54 LPAGVRFDPSDEELL-VHLAAKMGRSNmlshpliDDFISFLDGEdGICGTHPEKLP-GVKKDGSSCHFFHRPSMAYTTGTRKRRKIHan 140
                           799************.679999988886775442222223555536**********.7778899********************74443 PP

                   NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              + +W++tgk+++vl+ ++++ g kk++v+y   g+++k +kt+Wvmh+y+l
  Sphfalx0135s0032.1.p 141 greEVRWHKTGKTRPVLQ-NRKVLGFKKIMVLYerVGKKSKNVKTNWVMHQYHL 193
                           444778************.999***********544799999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-3940212IPR003441NAC domain
PROSITE profilePS5100534.43254212IPR003441NAC domain
PfamPF023651.2E-1455193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MVNNTFGAEL CQVGEDPGVL NSNSQQRGRM TNKDCPECGH IVRRSNAKME CMALPAGVRF  60
DPSDEELLVH LAAKMGRSNM LSHPLIDDFI SFLDGEDGIC GTHPEKLPGV KKDGSSCHFF  120
HRPSMAYTTG TRKRRKIHAN GREEVRWHKT GKTRPVLQNR KVLGFKKIMV LYERVGKKSK  180
NVKTNWVMHQ YHLGENEEET DGELVVCKVF FQKQPRNCSG GAPKTSDMLA EEECELSESD  240
IVSNWNQAGR SDFTSSIVSG VTKDSYNSIR ANQNKRKEHQ LESISAISEE GSHGLHTNST  300
LSKKQDCSRN RAHNLVSSSD HQNGGIHQAC GAGSGCEEEH TVNLGDEEQP WEAVVNTHGG  360
GDLNETSLHF EPEILELLCN EKLNGDPLVE DSSYGDMNLP GDAQQVGSSL ELLEEFGAGA  420
VQKMEDELEL GSPPNMLEYP VVTSQEIRDW LGKNSSQVEL DNTDSQSAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-13421933140Stress-induced transcription factor NAC1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361187.11e-118uncharacterized protein LOC112275234 isoform X2
TrEMBLA0A2K1ILP61e-116A0A2K1ILP6_PHYPA; Uncharacterized protein
STRINGPP1S251_11V6.11e-117(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.12e-78NAC domain containing protein 73