PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0138s0008.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GATA
Protein Properties Length: 446aa    MW: 48102.9 Da    PI: 4.7029
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0138s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.4e-17375409135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++C+t  Tp+WR gp g+ktLCnaCG++y++ +l
  Sphfalx0138s0008.1.p 375 CRHCQTQRTPQWRTGPMGPKTLCNACGVRYKSGRL 409
                           *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-16369423IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.398369405IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-14373432No hitNo description
CDDcd002028.35E-14374423No hitNo description
Gene3DG3DSA:3.30.50.103.6E-14374407IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.5E-15375409IPR000679Zinc finger, GATA-type
PROSITE patternPS003440375400IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDSAALLLPA TGLAAFECPQ LRKQQKPSLV PTGADVAAAG SAALVDVFQI DDLLDFSNED  60
IAGPIETEAD SLLAVNSCSS SLPAPVPSSA AAVQQKAEAF DHLQAAAASS VEKATAEQLH  120
HHHHHSTAKP QQVEEEEEIE AHGMIEADLC VPYDDLEELE WASRFLDDSF PVATTGVVPD  180
SSCCKGTWSM SDAGSVISIE ENDCMENISA AFLFTKQQQQ QQKYEKATSP VSVLEQQTSA  240
TSSELTSTGS EHSLDHFCTA VTVPGRARSK RSRSSAGGKK WTSGMILPST ATTTTTTTSC  300
GTNEISIAPS QWSTGEDEED DDGDDEEDTV EDGEEWQSGN FFHKPKQSRK LSSGCQQQQQ  360
DHHGGAGDSA AVLRCRHCQT QRTPQWRTGP MGPKTLCNAC GVRYKSGRLL PEYRPASSPA  420
YIPHKHSNSH KKVLEMRRQR ELMEA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-37GATA transcription factor 9