PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0139s0052.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 773aa MW: 85821 Da PI: 6.4298

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0139s0052.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	358.5	1e-109	396	764	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 +lLl+cA++v+++d ++a+ l+ +l+e++s +g+ +qR+a yf+eAL arl++++ +ly+a+ ++ + ++ l+a++l+++ P+ Sphfalx0139s0052.1.p 396 ADLLLRCAKMVEKNDVRKANDLIGELREHSSAYGNGVQRMAYYFMEALVARLSGTGGQLYAAICGNRPP---LAKLLKAYCLYVDNVPY 481 689********************************************************99888888...9************ PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177 k+ hl +Il+a++g+++vH+iD++i++G+QWp+L+q La+Rpegpp+lRiTg++++++g s+e++ etg+rL++fA+ ++pfe Sphfalx0139s0052.1.p 482 TKLNHLFSTATILDAFKGASCVHVIDYGINHGVQWPCLIQHLATRPEGPPHLRITGIDRQQPGfsSSERVIETGRRLTEFAKMWQLPFE 570 ********************************************************99999********************** PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +++ a+++e++++ +L+++++E+laVn+ +lh+lldesv ++s+r+ vL+ ++sl+Pkv++ a +n++ F+ r e+++++s+ Sphfalx0139s0052.1.p 571 YHA-FAEKWENITTAQLALRHDEVLAVNCF-KLHYLLDESVMVDSPRKIVLNRIRSLNPKVFIEGVVSAGYNAPFFMSRYHECMKHFSV 657 .6*********************5.6***************************************************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 +fd++e +lp+++ +r+ +Ere +grei n+vaceg er+er e++++W++r ++aGF + pl+ + +q+k+++ +++d + + e+ Sphfalx0139s0052.1.p 658 MFDAVEGSLPPDDPDRVLLERERFGREILNIVACEGLERVERAESYRQWQSRTQRAGFIQRPLNLAILSQMKAMMGSYHKD-FGIGEDG 745 ***************************************************************************77.*** PP GRAS 356 gslvlgWkdrpLvsvSaWr 374 g+++ gWk++ + +SaW+ Sphfalx0139s0052.1.p 746 GWILTGWKNHIVHGLSAWE 764 ****************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.662	369	745	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-107	396	764	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MQGSNQSKGD FSPLTTQLQQ AWLQSQIPKV QKRRLSTMIP AAAAQSRLGS SYSYFAAESF 60 ADSGYLSSIF PGLARSSQQQ QQQQQIVPTT QKPSSAAFLE RSCDQSSSGF PGRPVLPMLS 120 SYSTKTSNFP ANRAAASLVR NIHHPHRSLS TSIVEGSGLE EFSGLSSSQR RASSSSFLFS 180 ANLSFPPSRY SVQPSSNALL VPGAAARCLP ELDSIAASDS PLSAPLLENI LCMDEDMVQA 240 KNIAESSLMG HNSVPETSSS SSTAEIVDYD NSWIDDMILG TLPEQQTAQA QTAEWLIQEY 300 TRSLSVLVAD VSRASQSLQS PGNLWENGLD SCYSEYMFEV LNVDQYIERE AQAPARIDYR 360 QSLPSLESHE TVIPSAAKCW FEATSYAPDL PRVDLADLLL RCAKMVEKND VRKANDLIGE 420 LREHSSAYGN GVQRMAYYFM EALVARLSGT GGQLYAAICG NRPPLAKLLK AYCLYVDNVP 480 YTKLNHLFST ATILDAFKGA SCVHVIDYGI NHGVQWPCLI QHLATRPEGP PHLRITGIDR 540 QQPGFSSSER VIETGRRLTE FAKMWQLPFE YHAFAEKWEN ITTAQLALRH DEVLAVNCFK 600 LHYLLDESVM VDSPRKIVLN RIRSLNPKVF IEGVVSAGYN APFFMSRYHE CMKHFSVMFD 660 AVEGSLPPDD PDRVLLERER FGREILNIVA CEGLERVERA ESYRQWQSRT QRAGFIQRPL 720 NLAILSQMKA MMGSYHKDFG IGEDGGWILT GWKNHIVHGL SAWEPNPLVT NH*

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MQGSNQSKGD FSPLTTQLQQ AWLQSQIPKV QKRRLSTMIP AAAAQSRLGS SYSYFAAESF  60
ADSGYLSSIF PGLARSSQQQ QQQQQIVPTT QKPSSAAFLE RSCDQSSSGF PGRPVLPMLS  120
SYSTKTSNFP ANRAAASLVR NIHHPHRSLS TSIVEGSGLE EFSGLSSSQR RASSSSFLFS  180
ANLSFPPSRY SVQPSSNALL VPGAAARCLP ELDSIAASDS PLSAPLLENI LCMDEDMVQA  240
KNIAESSLMG HNSVPETSSS SSTAEIVDYD NSWIDDMILG TLPEQQTAQA QTAEWLIQEY  300
TRSLSVLVAD VSRASQSLQS PGNLWENGLD SCYSEYMFEV LNVDQYIERE AQAPARIDYR  360
QSLPSLESHE TVIPSAAKCW FEATSYAPDL PRVDLADLLL RCAKMVEKND VRKANDLIGE  420
LREHSSAYGN GVQRMAYYFM EALVARLSGT GGQLYAAICG NRPPLAKLLK AYCLYVDNVP  480
YTKLNHLFST ATILDAFKGA SCVHVIDYGI NHGVQWPCLI QHLATRPEGP PHLRITGIDR  540
QQPGFSSSER VIETGRRLTE FAKMWQLPFE YHAFAEKWEN ITTAQLALRH DEVLAVNCFK  600
LHYLLDESVM VDSPRKIVLN RIRSLNPKVF IEGVVSAGYN APFFMSRYHE CMKHFSVMFD  660
AVEGSLPPDD PDRVLLERER FGREILNIVA CEGLERVERA ESYRQWQSRT QRAGFIQRPL  720
NLAILSQMKA MMGSYHKDFG IGEDGGWILT GWKNHIVHGL SAWEPNPLVT NH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-51	401	765	25	380	Protein SCARECROW
5b3h_A	2e-51	401	765	24	379	Protein SCARECROW
5b3h_D	2e-51	401	765	24	379	Protein SCARECROW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	33	PKVQKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-118	GRAS family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0139s0052.1.p