PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0144s0014.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ZF-HD
Protein Properties Length: 272aa    MW: 29726.7 Da    PI: 9.3127
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0144s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.61.5e-3375131360
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                           ++rY+eC+kNhAaslG+havDGCgEfmp  geeg+++alkCaACgCHRnFHRreve e
  Sphfalx0144s0014.1.p  75 TTRYRECQKNHAASLGSHAVDGCGEFMPL-GEEGSPDALKCAACGCHRNFHRREVEGE 131
                           789*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2371140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-3076128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-3077128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.85678127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.78E-20195269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-30197270IPR009057Homeodomain-like
TIGRFAMsTIGR015653.1E-25208264IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MRLLLTTSPQ LLHQPPLFHD STKLKMLKSG SNNNNNNNNG TAMDDSIQAL EITSPVNRTL  60
NSGNKDKDKK VAATTTRYRE CQKNHAASLG SHAVDGCGEF MPLGEEGSPD ALKCAACGCH  120
RNFHRREVEG EIATCDCHKK DAKKRGIQQV LAAATAMAYP SSVTQFQQGH KPPMTPIPMM  180
AMSTGAADSD EQEGGGGVGG GGSPSNIKKR FRTKFSTEQK DEMYNFAEKL GWKMQKHDEL  240
AVQEFCANLG VKRHVLKVWM HNNKHTMAKK T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-242092661875ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402412.11e-85zinc-finger homeodomain protein 1-like
TrEMBLA0A2K1J0V62e-84A0A2K1J0V6_PHYPA; Uncharacterized protein
TrEMBLA9RDY78e-85A9RDY7_PHYPA; Predicted protein
STRINGPP1S3_539V6.14e-85(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-56homeobox protein 22