PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0144s0024.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 938aa MW: 101392 Da PI: 5.5632

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0144s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	314.6	2.2e-96	473	935	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal........ 81 lv+lLl cAea+++++ e+a lL++l+ ++sp+gdpmqR+a++f+eAL+ r r+ + + + s+++ +++ ++ a++ Sphfalx0144s0024.1.p 473 LVHLLLGCAEAIDASEYERAGDLLCHLRAISSPQGDPMQRIAFHFAEALSDRRRRHNN---NNTNLSNSQ-YDQYRHKASYcdlvrpat 557 68************************************************999222...222222222.234444444457788999 PP GRAS 82 .......................................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqa 131 ++f+ev P+ kf+h+t NqaIleav++++rvH++D++i+qGlQWpa++q+ Sphfalx0144s0024.1.p 558 nstsrnaaasacsrpaaaaalvqqlpvqqldeysdlqayQAFYEVLPFAKFAHFTGNQAILEAVASSSRVHVVDLEIGQGLQWPAFFQS 646 999999**************************99999******************************************** PP GRAS 132 LasRpegpp.slRiTgvgspesgskeeleetgerLakfA..............eelgvpfefnvlvakrledleleeLrvkpgEalaVn 205 L Rp+gpp +lR+T+vgs s+ +l++tg+rL++f ++ ++fe+n++++++++d+++ ++++++E+l+Vn Sphfalx0144s0024.1.p 647 LVLRPGGPPaHLRMTAVGS----SSSTLQQTGRRLTQFVagtlvvdnhmeqqqQQKSLQFEYNPVTVEKIQDFHPGLINLRSDETLVVN 731 *88888*****....999999999999998522222222222221345689************************** PP GRAS 206 lvlqlhrll............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +++ lh+ll + +++++ +++L +++s+ P+vv + e ea+h+ + F+ rf+eal+y+ alfd+lea+lpr+s +r Sphfalx0144s0024.1.p 732 CSHILHKLLakneetlttttsAATGAVAA-LENMLLMIRSMGPTVVCLLEVEANHDVNFFMSRFVEALHYFCALFDTLEATLPRDSPQR 819 *****99988888876544444444.899**************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee................. 354 + +E+ ++ +i+++va+eg +r++rh + ++W++ +++aGF+ + s++a +qa+lll+ +k++ + +++ Sphfalx0144s0024.1.p 820 NQIENTTFAAQIKDIVAAEGWDRQARHLRSHSWQSHFQNAGFRLLLPSSYAIEQAHLLLALHKQQQQQQQQQqqwvtscststnvstpy 908 ***********************************************************55444443347888888999999999 PP GRAS 355 .......sgslvlgWkdrpLvsvSaWr 374 sg l+lgW+d p+++vS+W+ Sphfalx0144s0024.1.p 909 klaqltdSGVLTLGWHDTPIIAVSSWT 935 999999899999************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.39	447	891	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.6E-94	473	935	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence Send to blast
MASAQIHQRT VQQAGSHLQQ HHAVGNALVG SAPALGALRW KASGTHGGAA GDILDPSAAC 60 FKQAKEHQAG TAAMMQLLHA VEPTSVLDLQ TSPGRSCSST VSSLSSQQSS LWSHDVADSS 120 SPALVGAAHK TITIAQDQQQ LQDMISCCRP DHRILDSSGN SAAAAMFQNS QLAAASSVEQ 180 ALLHYAAGPG ETFLSWMDSC MEDAHGAHDL ELTDFEECDV GDQECPATSQ LVKLLDHDQG 240 PIAPGPSCSD MDFVNAVDVQ GFEYGMNQQL HIRSVENNNS FPSCISSLVC DQQADIMLDS 300 EQPGLSHLDE IKFFNSAASA SLRLCRVPAA AAAAAGPLHE LSNDHASVAE QGSTTTTTVI 360 AADPFSASTL MFTTEQLWSP AAAGSSQIMN ILHADQQQPV LTTDDQSISL LGRSQNLNYN 420 LSNVAISCSG DQSGRSSTYT STDHHGSQIF IPSAGQQQHL DQADNSTSGG LQLVHLLLGC 480 AEAIDASEYE RAGDLLCHLR AISSPQGDPM QRIAFHFAEA LSDRRRRHNN NNTNLSNSQY 540 DQYRHKASYC DLVRPATNST SRNAAASACS RPAAAAALVQ QLPVQQLDEY SDLQAYQAFY 600 EVLPFAKFAH FTGNQAILEA VASSSRVHVV DLEIGQGLQW PAFFQSLVLR PGGPPAHLRM 660 TAVGSSSSTL QQTGRRLTQF VAGTLVVDNH MEQQQQQKSL QFEYNPVTVE KIQDFHPGLI 720 NLRSDETLVV NCSHILHKLL AKNEETLTTT TSAATGAVAA LENMLLMIRS MGPTVVCLLE 780 VEANHDVNFF MSRFVEALHY FCALFDTLEA TLPRDSPQRN QIENTTFAAQ IKDIVAAEGW 840 DRQARHLRSH SWQSHFQNAG FRLLLPSSYA IEQAHLLLAL HKQQQQQQQQ QQQWVTSCST 900 STNVSTPYKL AQLTDSGVLT LGWHDTPIIA VSSWTLC*

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence Send to blast

MASAQIHQRT VQQAGSHLQQ HHAVGNALVG SAPALGALRW KASGTHGGAA GDILDPSAAC  60
FKQAKEHQAG TAAMMQLLHA VEPTSVLDLQ TSPGRSCSST VSSLSSQQSS LWSHDVADSS  120
SPALVGAAHK TITIAQDQQQ LQDMISCCRP DHRILDSSGN SAAAAMFQNS QLAAASSVEQ  180
ALLHYAAGPG ETFLSWMDSC MEDAHGAHDL ELTDFEECDV GDQECPATSQ LVKLLDHDQG  240
PIAPGPSCSD MDFVNAVDVQ GFEYGMNQQL HIRSVENNNS FPSCISSLVC DQQADIMLDS  300
EQPGLSHLDE IKFFNSAASA SLRLCRVPAA AAAAAGPLHE LSNDHASVAE QGSTTTTTVI  360
AADPFSASTL MFTTEQLWSP AAAGSSQIMN ILHADQQQPV LTTDDQSISL LGRSQNLNYN  420
LSNVAISCSG DQSGRSSTYT STDHHGSQIF IPSAGQQQHL DQADNSTSGG LQLVHLLLGC  480
AEAIDASEYE RAGDLLCHLR AISSPQGDPM QRIAFHFAEA LSDRRRRHNN NNTNLSNSQY  540
DQYRHKASYC DLVRPATNST SRNAAASACS RPAAAAALVQ QLPVQQLDEY SDLQAYQAFY  600
EVLPFAKFAH FTGNQAILEA VASSSRVHVV DLEIGQGLQW PAFFQSLVLR PGGPPAHLRM  660
TAVGSSSSTL QQTGRRLTQF VAGTLVVDNH MEQQQQQKSL QFEYNPVTVE KIQDFHPGLI  720
NLRSDETLVV NCSHILHKLL AKNEETLTTT TSAATGAVAA LENMLLMIRS MGPTVVCLLE  780
VEANHDVNFF MSRFVEALHY FCALFDTLEA TLPRDSPQRN QIENTTFAAQ IKDIVAAEGW  840
DRQARHLRSH SWQSHFQNAG FRLLLPSSYA IEQAHLLLAL HKQQQQQQQQ QQQWVTSCST  900
STNVSTPYKL AQLTDSGVLT LGWHDTPIIA VSSWTLC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-54	480	935	26	379	Protein SCARECROW
5b3h_A	6e-54	480	935	25	378	Protein SCARECROW
5b3h_D	6e-54	480	935	25	378	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	4e-60	RGA-like 2

Link Out ? help Back to Top
Phytozome	Sphfalx0144s0024.1.p