PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0145s0003.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 1080aa    MW: 116549 Da    PI: 7.094
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0145s0003.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98e-09741767127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +kt+lC +  +tG C++G++C+FaHgp
  Sphfalx0145s0003.2.p 741 FKTKLCTHNEKTGKCPHGSKCTFAHGP 767
                           69***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.5E-34354521IPR020683Ankyrin repeat-containing domain
SMARTSM00248370370399IPR002110Ankyrin repeat
SuperFamilySSF484039.33E-31372520IPR020683Ankyrin repeat-containing domain
PfamPF136372.5E-6373413No hitNo description
CDDcd002048.72E-29374499No hitNo description
PROSITE profilePS5029732.89374519IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.458403443IPR002110Ankyrin repeat
SMARTSM002480.002403440IPR002110Ankyrin repeat
PfamPF127963.2E-11425507IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.923444469IPR002110Ankyrin repeat
SMARTSM002480.36444474IPR002110Ankyrin repeat
PROSITE profilePS5008811.247478510IPR002110Ankyrin repeat
SMARTSM002489.6E-5478507IPR002110Ankyrin repeat
SuperFamilySSF902293.01E-8679712IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-14679712IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817682710IPR000571Zinc finger, CCCH-type
SMARTSM003560.031682709IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-8739771IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-13740771IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6740767IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028740768IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6741767IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1080 aa     Download sequence    Send to blast
MREGSTLAVE AAERMGTGTI WNEVKQQGTP RKAAAPRLVD MAAKLEEAVM SSRLEVAWDL  60
STPAAFIVAK LREKDLREIQ ALELKCKDQM VPLAFKLAKG LKLVPLVALL LVGRGAVLNS  120
VAKKAADPGG MKKVDTGLNV GAKQVDSLGN LAAKKLDTPL AKKVEPTPVS GLVKKVEGCD  180
DCPGGTLVDL VLGMALAHPS SCPPTRFADK LGKPKSFTEE GEATWMEGPN LHSLSDFDGG  240
MGFEIAPKWL EDWKGGGGGS DSEHLKDFSK WDESFTAPKP RQDADDWEEV TSKSRKKSVS  300
LPGLKDMEDK LRKTLSCGGA ETENATNLRF FGHKTPTRGD DPDHNCAIAR KLLECLLEFR  360
PRLSAHAQSP FLPPLLRAAQ ASNEFFVSLL LDAGAPVNDR DVDGNTALHW ALRQATPLNR  420
RTVNAHVVSQ LLEAGASVTI GNKLGATPVH TAAGHGHFEA LSLILDKDAG GVNVMAATKE  480
TPLHYAVKNN HVACSYLLLK HGANRNVASL RNQKPLQLAP SVEMRVLLTM DDKIIKEQSW  540
EGLKEMLVQA SSPVSPLFSL NYLQPQSPFP SQFPSIADST SKSYFPSSFS QVRFPQSSSV  600
SSQIGSSSPL QLFQPNPSSS LSFSESVSRP PVLSQSYPFS RPLSQDGNPF DWLAPQIQSF  660
NGQEVGRSSD RELIKETVNL PQYKTVMCRF YTSSEGCGWG SKCHFAHSEE ELMSADRIDS  720
SEYRIGASQG DINGDQLLKN FKTKLCTHNE KTGKCPHGSK CTFAHGPGEL RGTLFAPSSA  780
RPIVKTEPKP AEIAVQRHYL PFRGKKVEVK RAMARIDYGD EPKPNSPTSP TGNSSYFLPT  840
APGSGSLRFS PSSPAGETVE EVFQVPQQAW SLPPLAVDSG STNAPADIIH TSSRNTSTLF  900
PDRNILPQGS PYNSSHLLPD SSNHPLAYHS APTLSQNEVS RIANGSFPVQ DSGNYYSFGH  960
LFPQSSSHSL DSVLATERGS FLEPVGASLS RHPFISPSHP HSMPGFLHSH PLDSVPLPYS  1020
NGNIAAHPLN RSVDPGSQSF YSNLPGTSSY ATTNGSSQDG VNDEEEFSEL LAMLQGGTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n0r_A9e-1937451941254 ankyrin repeats
5gik_A2e-183755196128Artificial ankyrin repeat protein_Ank(GAG)1D4 mutant -S45Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389481.10.0uncharacterized protein LOC112288943 isoform X1
RefseqXP_024389482.10.0uncharacterized protein LOC112288943 isoform X1
RefseqXP_024389483.10.0uncharacterized protein LOC112288943 isoform X1
RefseqXP_024389484.10.0uncharacterized protein LOC112288943 isoform X1
STRINGPP1S123_139V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.15e-09C3H family protein