PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0145s0005.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

SRS

Protein Properties

Length: 661aa MW: 68890.3 Da PI: 6.8594

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0145s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	111.1	1.7e-34	342	431	3	93
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaae.aaskrkrelkskkqsalsstk 90 +g+++Cq+CGnqakkdC+++RCRtCCksrgf+C+th+kstWvpaakrrerq+++a+a+s+ ++ +sk+ r++ + ++al + Sphfalx0145s0005.1.p 342 TGSSACQECGNQAKKDCSYQRCRTCCKSRGFECSTHLKSTWVPAAKRRERQAAEASATSSGGLLLHRpGKSKHARTT--TIATALVANA 428 67899************************************************999988877655440333444443..2333333322 PP DUF702 91 lss 93 ++s Sphfalx0145s0005.1.p 429 TNS 431 222 PP
2	DUF702	82.7	9.2e-26	461	538	77	154
DUF702 77 elkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +l++++ s++ +t++++++++ ++++ lP+ev+++a+f+cvr+ +v+d+e+e+aYq++v+igGh+fkG+LydqG+++ Sphfalx0145s0005.1.p 461 HLTATHPSQTICTSIVTKSPPVSSSKGGLPPEVRAQALFKCVRLMGVEDSENEFAYQATVKIGGHIFKGVLYDQGVDN 538 3456788899999999999999999999***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.0E-53	344	537	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.6E-26	347	388	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.9E-24	489	536	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
EEEEEEEEEK RIFVQVDCGD GERGRVETSR RGIVARVGVT DGGGGGGRGG GGGDDPSSSS 60 SLKDGDLSLG YAYAARSLPP NVVLTNHQHQ QHHPIIPWGR PPPVVYGATH HRDVYQTILS 120 NRGEEDYGGA HSGGGGGGGA HAAVAHVVHQ QQQQQHRALL HGVQGYESSL KREVQQRAAA 180 AADDATGLSS APPNFADDEE DDEEASSNSG SVGKRTADHH HHHHHHHNNN NNNNYNSNQA 240 SGQNWALAAA GAREEAAAVA QGMNVVQSLQ QQQQHNHPNT HGVPSVDNHL HLHGGNQEPS 300 AEELWGAGGG KAKETGLQQQ QLVVVPAAAG TVTTGPTITT TTGSSACQEC GNQAKKDCSY 360 QRCRTCCKSR GFECSTHLKS TWVPAAKRRE RQAAEASATS SGGLLLHRPG KSKHARTTTI 420 ATALVANATN SLTTTSAISL QGGGGGGGGG GGASDLNNSA HLTATHPSQT ICTSIVTKSP 480 PVSSSKGGLP PEVRAQALFK CVRLMGVEDS ENEFAYQATV KIGGHIFKGV LYDQGVDNGQ 540 AAAAAPSPSA LGELQLGGGN SRGGGMPSSS SALIDPSSSL YGSGSALLGD AENVHKAGPQ 600 SFGLQTKRVM THDLPVLNGQ LLLSIHYYAC CQTCHLCNNY IASVQNFRRN LVPTAQYVDY 660 *

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

EEEEEEEEEK RIFVQVDCGD GERGRVETSR RGIVARVGVT DGGGGGGRGG GGGDDPSSSS  60
SLKDGDLSLG YAYAARSLPP NVVLTNHQHQ QHHPIIPWGR PPPVVYGATH HRDVYQTILS  120
NRGEEDYGGA HSGGGGGGGA HAAVAHVVHQ QQQQQHRALL HGVQGYESSL KREVQQRAAA  180
AADDATGLSS APPNFADDEE DDEEASSNSG SVGKRTADHH HHHHHHHNNN NNNNYNSNQA  240
SGQNWALAAA GAREEAAAVA QGMNVVQSLQ QQQQHNHPNT HGVPSVDNHL HLHGGNQEPS  300
AEELWGAGGG KAKETGLQQQ QLVVVPAAAG TVTTGPTITT TTGSSACQEC GNQAKKDCSY  360
QRCRTCCKSR GFECSTHLKS TWVPAAKRRE RQAAEASATS SGGLLLHRPG KSKHARTTTI  420
ATALVANATN SLTTTSAISL QGGGGGGGGG GGASDLNNSA HLTATHPSQT ICTSIVTKSP  480
PVSSSKGGLP PEVRAQALFK CVRLMGVEDS ENEFAYQATV KIGGHIFKGV LYDQGVDNGQ  540
AAAAAPSPSA LGELQLGGGN SRGGGMPSSS SALIDPSSSL YGSGSALLGD AENVHKAGPQ  600
SFGLQTKRVM THDLPVLNGQ LLLSIHYYAC CQTCHLCNNY IASVQNFRRN LVPTAQYVDY  660
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	52	GGRGGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G33210.1	8e-19	SHI-related sequence 8

Link Out ? help Back to Top
Phytozome	Sphfalx0145s0005.1.p