PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0148s0009.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HSF
Protein Properties Length: 532aa    MW: 57848.9 Da    PI: 7.9463
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0148s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.2e-35371292103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y +++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+
  Sphfalx0148s0009.1.p  37 FLTKTYYLVDDPATDDIVSWGEDNTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRRGE 116
                           9*****************************************************************99.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i+r+ks+
  Sphfalx0148s0009.1.p 117 KQLLCEIHRRKSQ 129
                           **********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3730121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-5933126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-3334126IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-193760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.6E-3137126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-1988100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000493.7E-5448464IPR017987Wilm's tumour protein
PRINTSPR000493.7E-5481495IPR017987Wilm's tumour protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MAAALSLSFE TTDLQAAGGG GGSLLSYDCH RSVPAPFLTK TYYLVDDPAT DDIVSWGEDN  60
TTFVVWRPPE FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VPDRWEFANE FFRRGEKQLL  120
CEIHRRKSQQ TAGGNAASST QQQQQSRDSH SPSLSNEDQT TTSWSPLSSS PLSSPRPHQL  180
LPPPLPPSTS AAAAAVFMCD ENERLRKDNS LLLSEVSRLR RLYDETMLIL QQRSSCSSST  240
LHDLAWLRRI RGTSAGGVLS AHAEGLGALG MKPRDTTSVA EQLDTAARKE QIRELSLQVM  300
SRTVEHANIG VPLPPLPPTS VDSAATRAGL QQQQLLRQST PGAACLSYHR DNSAVTPKAS  360
TLSFLDGKLR EIKASSCAAA NASNYKQLQL IKSTTSTTSD HQEAAAAGKD LHGPKVFGVP  420
LMRSQSSNWD CNETAEAAHD MRKRPRCNSW GDVELPAAAA AATASSKDVV PALVRHDQRS  480
PSPSPPPPPP PPPPPPSSVC VKTELGLELR PTSVEAPWLQ ICAARDERVY I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A8e-23331267110Heat shock factor protein 1
5hdn_A8e-23331267110Heat shock factor protein 1
5hdn_B8e-23331267110Heat shock factor protein 1
5hdn_C8e-23331267110Heat shock factor protein 1
5hdn_D8e-23331267110Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-62heat shock transcription factor B4