PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0152s0021.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

ERF

Protein Properties

Length: 246aa MW: 27338.2 Da PI: 9.6553

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0152s0021.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.5	6.9e-13	137	179	3	48
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 y+GVr ++ ++Wv eIr ++++++lg++ t+eeAa+a++ Sphfalx0152s0021.1.p 137 YRGVRHRSELNKWVTEIRP----TaHKRKIWLGTYKTPEEAARAYDV 179 9*************999....2235****************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	15.501	136	193	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.8E-20	136	195	IPR001471	AP2/ERF domain
SMART	SM00380	8.9E-14	136	199	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-14	136	194	IPR016177	DNA-binding domain
CDD	cd00018	8.45E-15	137	195	No hit	No description
Pfam	PF00847	3.7E-8	137	178	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MPDIMPGYLG GSVKVEKVEK QERNNDEFAG ANFLSLGTGT SGRRSSTTGG GQRVHKDLEN 60 NEIDLNWPPV DQQHERGTEE SSTGTTTEEE ESNSYNNRRR SSAGRTGGGV RGAVEAAAEL 120 NYNSRAISST SKFQETYRGV RHRSELNKWV TEIRPTAHKR KIWLGTYKTP EEAARAYDVG 180 IYYTRKNIPL NFPESIESLP ELPEGSWEEL APFVKKQALT AAKRARVQND LPRTRILPKS 240 IASRG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024359180.1	3e-50	dehydration-responsive element-binding protein 1F-like
TrEMBL	A0A144LHE8	3e-51	A0A144LHE8_9BRYO; Dehydration-responsive element-binding protein 5-8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	5e-14	ERF family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0152s0021.1.p