PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0153s0040.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 305aa    MW: 33384.5 Da    PI: 6.142
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0153s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1984134155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           + y+GVr++  +g+WvAeIr+p   + r  r +lg++ taeeAa+a+++a++ l+g
  Sphfalx0153s0040.1.p  84 CSYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTYATAEEAARAYDKAARVLYG 134
                           67*****999.**********8...3.35**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.89E-3184143No hitNo description
PfamPF008472.3E-1384134IPR001471AP2/ERF domain
PROSITE profilePS5103222.41885142IPR001471AP2/ERF domain
SMARTSM003801.3E-3485148IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2185143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-3085143IPR001471AP2/ERF domain
PRINTSPR003679.3E-118697IPR001471AP2/ERF domain
PRINTSPR003679.3E-11108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MQQHGNNSSV PETLAWWAGQ NQTLNQGLTT QTLRQAQLQS LTMHRDPGPC TLRYEPRKKI  60
RKPPAKGSKK GCMKGKGGPQ NAMCSYRGVR QRTWGKWVAE IREPNRGSRL WLGTYATAEE  120
AARAYDKAAR VLYGSCALLN LPDGLPGAVA AGAGASEVCT STPPNTLPGS LPQDTQKLQE  180
SKVKETELTT NRMASASSQD LATNIDTVNS EASEKHVIEA DIPWMMSNQN LYINEVAMQL  240
EHQEGGTQEL LQCDLQGSDN LFDNLDILDM KFDGAELPQL PARSNIDSSM MTNISTYSSD  300
LWLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1886142360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.11e-23DRE-binding protein 2A