PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0157s0004.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

LBD

Protein Properties

Length: 197aa MW: 21321 Da PI: 8.4773

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0157s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.7	1.7e-42	23	123	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da+sslvyeA+ar+rdPvyG++g i++lqqq ++ Sphfalx0157s0004.1.p 23 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKIFGASNVSKMLMEVPESQRADAASSLVYEANARIRDPVYGCMGAISALQQQAQS 111 7************************************************************************************** PP DUF260 90 lkaelallkeel 101 l+ael+++++e+ Sphfalx0157s0004.1.p 112 LQAELNAVRQEI 123 ******9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.737	22	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-42	23	120	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MSSSPLDRRA MPGSQGQGNS STPCAACKLL RRRCAQECPF SPYFSPHEPQ KFASVHKIFG 60 ASNVSKMLME VPESQRADAA SSLVYEANAR IRDPVYGCMG AISALQQQAQ SLQAELNAVR 120 QEIMRYRRHD NAVAEATAAT AAMMVGGYQG HNLQDRGVVA HPLSTQTTAS EVYTVPSSNN 180 VATPDLKERS YWSPLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-48	10	126	1	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-48	10	126	1	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024362454.1	4e-78	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	8e-63	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2R6WX81	1e-90	A0A2R6WX81_MARPO; Uncharacterized protein
STRING	PP1S156_26V6.1	2e-77	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	8e-63	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Sphfalx0157s0004.1.p

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]