PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0158s0012.4.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

NF-YC

Protein Properties

Length: 213aa MW: 24323 Da PI: 6.2269

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0158s0012.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	173.4	2.5e-54	45	149	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 ql++fw++q ie++++f+nh+lPlarikki+k+dedvkmi+aeaPvl++kace+fileltlrsw+h+eenkrrtl+++dia a+tr Sphfalx0158s0012.4.p 45 QLQTFWQQQmqeIEQVNEFRNHQLPLARIKKIMKSDEDVKMIAAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRG 133 89***9987889*********************************************************************** PP NF-YC 87 difdflvdivprdelk 102 difdflvdivprdelk Sphfalx0158s0012.4.p 134 DIFDFLVDIVPRDELK 149 ***********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.37E-33	29	139	IPR009072	Histone-fold
Pfam	PF00808	1.8E-21	67	130	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-36	68	145	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MAAHQMPTTA PGMPHPSAVI PPQYAHSQPQ QMQPQLHYQH LQKQQLQTFW QQQMQEIEQV 60 NEFRNHQLPL ARIKKIMKSD EDVKMIAAEA PVLFAKACEM FILELTLRSW IHTEENKRRT 120 LQRNDIAGAI TRGDIFDFLV DIVPRDELKD EDLAVPWTGV PGEPVPYGNM YYPPVAGQPM 180 HHAMPPEMMV GQPALAQNPQ MMYQPPQQGN MQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-53	53	145	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	123	RRTLQRN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369382.1	2e-97	nuclear transcription factor Y subunit C-2-like
Swissprot	Q9SMP0	1e-68	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A2K1IBU6	2e-93	A0A2K1IBU6_PHYPA; Uncharacterized protein
STRING	PP1S315_9V6.3	9e-97	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	9e-65	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Sphfalx0158s0012.4.p

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]