PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0165s0019.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 709aa    MW: 78080 Da    PI: 5.211
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0165s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.41.1e-5651321128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           lppGfrFhPtd+elv +yLk+kv gk++e+ +v++evd+yk+ePwdLp k +++++++ewyfFs rdkky++g+r+nrat++gyWkatg
  Sphfalx0165s0019.1.p   5 LPPGFRFHPTDQELVAFYLKRKVCGKRIEF-DVVAEVDLYKCEPWDLPdKsSLSSNDREWYFFSARDKKYPNGSRTNRATEEGYWKATG 92 
                           79***************************9.99**************96346777899******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd++v++ +++++g+kktLvfykgrap+g++tdWvmheyrl
  Sphfalx0165s0019.1.p  93 KDRAVCT-GSRTIGMKKTLVFYKGRAPHGSRTDWVMHEYRL 132
                           ******9.9******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-633156IPR003441NAC domain
PROSITE profilePS5100561.5295156IPR003441NAC domain
PfamPF023657.7E-296132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MARRLPPGFR FHPTDQELVA FYLKRKVCGK RIEFDVVAEV DLYKCEPWDL PDKSSLSSND  60
REWYFFSARD KKYPNGSRTN RATEEGYWKA TGKDRAVCTG SRTIGMKKTL VFYKGRAPHG  120
SRTDWVMHEY RLQEEDGEKG RATAQDAFVL CRVFMKSGPG PKNGEQYGAT FSEDDYKSPP  180
PPEEGVGDIA DNEHVALVEG GQVKQEPDIS VEEVGVGSMI SQRLGVGADS NSNMLEYTAD  240
TCGGQSSILQ ETLSEKESEE ILTHADLPQG WENFPPIPHN METLQYGHFL QEGEILEEML  300
QSAESSQAEQ HNWQDHLIDH MYGDVDGISY GGTLHGDFLE LKDLQEIPMQ QEEQKMEIGF  360
DRNIWLQPQS HKPMVRQLNE QGTAVRRVRL QRHPIKETGE AKNKQLAEKS GFQPQAINNQ  420
GYGCVTTAGH STTGELQEQS LGHEFRGSVR HPLQSESEVA FKDRLPNLED CIGSGSCPAM  480
DTQASAGDGG VWNGSVDSRL SSTLDHADIS VMNPKCGAVF FNDSADRMTF IGTESFAAAS  540
SNFNPPETPL GFDNEEGHAT LNLKSEGYNC STTETPCEES SQLDCSMVSR PLGSQLMRLA  600
TTKLKKASAV EAGKLIIGSI NVTSSNTFVT FPTIPSKCSE GGGKHMSAAM ADAHANVWGA  660
KQKYPSCSKG NAKKQSSIQS FFFGALAGAC WLRMLQGIWR HASVFVSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-55515615168Stress-induced transcription factor NAC1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-79NAC domain containing protein 2