PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0166s0008.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 507aa    MW: 58236.4 Da    PI: 6.4055
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0166s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017263285123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C+ C    +rk++L rH+r++
  Sphfalx0166s0008.1.p 263 FFCEFCLSFMKRKEQLARHMRKC 285
                           67*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541603.3E-21113190IPR016197Chromo domain-like
Gene3DG3DSA:2.30.30.2705.5E-37118188No hitNo description
PfamPF117178.6E-20119175IPR025995RNA binding activity-knot of a chromodomain
CDDcd000245.86E-5132176No hitNo description
Gene3DG3DSA:2.30.30.2705.5E-37224274No hitNo description
PROSITE profilePS5172675.647229500IPR002717Histone acetyltransferase domain, MYST-type
SuperFamilySSF557293.73E-111230501IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.40.630.303.6E-72288430IPR016181Acyl-CoA N-acyltransferase
PfamPF018534.5E-84290467IPR002717Histone acetyltransferase domain, MYST-type
CDDcd043010.00267341399No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MVGFEREAGF VFREEEEDIP MMDSFEENAP AGLGNSKETV GGGGGVLRDD DILVVSAATL  60
EYGRNPMKDS TNNPKHNNNG RMPLSLPAAT PTASAMEQTE NLSVEYSFKK RKSIIPLPLE  120
VGTRVLCRWR DDKLHPVKVI ERRKLPSGPD DYQYYVHYNE FNRRLDEWVK LEQLELESVE  180
PDTDEKVEDK AAGGLKMTRH QKRKIEETHA EAGHEDFDAA SLREHEEFTK VKNVSKIELG  240
KYEIDTWYFS PFPPEYCDCN KLFFCEFCLS FMKRKEQLAR HMRKCELKYP PGDEIYRQGS  300
LSMFEVDGKK NKIYGQNLCY LAKLFLDHKT LYYDVDLFLF YILCECDERG CHMVGYFSKE  360
KHSEEGYNLA CILTLPPYQR KGYGKFLIAF SYELSKKEGK VGTPERPLSD LGLLSYRGYW  420
TRVLLDILKK HRSNVSIKEL SDLTAIKTED IISTLQSLEL IQYRKGQHVI CADPKLLERH  480
LKAAGKGGLE VDASKLIWTP YKEQGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dnc_A1e-1212255041282Histone acetyltransferase KAT8
4dnc_B1e-1212255041282Histone acetyltransferase KAT8
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone acetyltransferase which may be involved in transcriptional activation. {ECO:0000250|UniProtKB:Q9LXD7}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374032.10.0putative MYST-like histone acetyltransferase 1
SwissprotQ8LI340.0MYST1_ORYSJ; Putative MYST-like histone acetyltransferase 1
TrEMBLA0A2K1KNZ90.0A0A2K1KNZ9_PHYPA; Histone acetyltransferase
STRINGPP1S13_111V6.10.0(Physcomitrella patens)