PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0169s0018.3.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GATA
Protein Properties Length: 338aa    MW: 36852 Da    PI: 6.7975
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0169s0018.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.3e-16262298135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cg  +  Tp++Rrgp g++tLCnaCGl+++ kg+
  Sphfalx0169s0018.3.p 262 CVHCGIGErlTPMMRRGPAGPRTLCNACGLMWANKGV 298
                           *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132016.001120155IPR010399Tify domain
SMARTSM009794.8E-12120155IPR010399Tify domain
PfamPF062007.4E-15121154IPR010399Tify domain
PROSITE profilePS5101712.818188230IPR010402CCT domain
PfamPF062032.4E-15188229IPR010402CCT domain
SMARTSM004012.5E-11256309IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.959256312IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-12258308No hitNo description
Gene3DG3DSA:3.30.50.101.8E-15261303IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440262289IPR000679Zinc finger, GATA-type
CDDcd002022.28E-14262304No hitNo description
PfamPF003201.6E-13262298IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSEADHHSQA LHAHRHGTHH STLNHSLGHG QPADSHEMHA HTQADANVQA HGEAHAQGHI  60
DANNVHGYHV HHRHPIQHNE ENGAGLEEHE DDPDEEGLDE AEMQSDSGHQ DVPPQVLAVR  120
SQESTQLTLS YQGEVYVFDT VPPEKVQAVL LLLGGREIPP GMSVGNVSNH HSSKGLMELP  180
VRMNMPQRLA SLTRFREKRK ERCYDKKIRY TVRKEVAQRM HRKKGQFASL KSAAEEPTSV  240
ANWDGSPAQL AGPTAVQQEV MCVHCGIGER LTPMMRRGPA GPRTLCNACG LMWANKGVLR  300
DLSKNVPVSQ TTPQPQALLQ QGSDPSAATG ADSSLAA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400208.11e-139GATA transcription factor 28-like isoform X2
SwissprotQ8H1G07e-78GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2K1J5891e-137A0A2K1J589_PHYPA; Uncharacterized protein
STRINGPP1S68_204V6.11e-135(Physcomitrella patens)
STRINGPP1S69_103V6.21e-135(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-80ZIM-LIKE 2