PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0170s0024.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

LBD

Protein Properties

Length: 93aa MW: 10325.8 Da PI: 6.7874

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0170s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	47.9	3.8e-15	1	43	45	87
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +l++lp+ +red ++sl+yeA+ar++dPvyG+vg i+ lqqq+ Sphfalx0170s0024.1.p 1 MLHELPPPHREDCVNSLAYEADARVQDPVYGCVGAISVLQQQV 43 7899*************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.646	1	60	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-13	1	43	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MLHELPPPHR EDCVNSLAYE ADARVQDPVY GCVGAISVLQ QQVFTSFLLS SPFLAHETSL 60 KRSQTLSLNH HHYAPLKLQG ITQVSFSINP LW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-17	1	43	55	97	LOB family transfactor Ramosa2.1
5ly0_B	3e-17	1	43	55	97	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1L087	6e-25	A0A2K1L087_PHYPA; Uncharacterized protein
STRING	PP1S69_130V6.1	2e-21	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	3e-19	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Sphfalx0170s0024.1.p