PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0173s0005.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 785aa    MW: 86226.9 Da    PI: 4.645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0173s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.32.1e-5541311128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           +ppGfrFhPtdeelv +yLk+kv+g+ le   vi+ vd+yk+ePwdLp k ++ ++++ewyfFs+rd+ky+tg+r+nrat++gyWkatg
  Sphfalx0173s0005.1.p   4 VPPGFRFHPTDEELVAYYLKRKVSGRALES-GVIAVVDLYKCEPWDLPdKsCIGGNDQEWYFFSPRDRKYPTGSRTNRATEAGYWKATG 91 
                           69*************************999.99**************96347888999******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd+ v + +++++g+kktLvfy+grap+ge+tdWvmheyr+
  Sphfalx0173s0005.1.p  92 KDRVVRT-GSRNIGMKKTLVFYRGRAPSGERTDWVMHEYRI 131
                           ***9999.99*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-613151IPR003441NAC domain
PROSITE profilePS5100560.3414151IPR003441NAC domain
PfamPF023655.8E-305131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MARVPPGFRF HPTDEELVAY YLKRKVSGRA LESGVIAVVD LYKCEPWDLP DKSCIGGNDQ  60
EWYFFSPRDR KYPTGSRTNR ATEAGYWKAT GKDRVVRTGS RNIGMKKTLV FYRGRAPSGE  120
RTDWVMHEYR IEEQEVPGFQ DAYVLARVFK KSGPGPKNGE QYGGAFIEEA YRSPPQEDTV  180
VEFPVEQSGS LTEPALVLEP LPAVKTELSE GASVHSPAAV IPEGPDKTLE YEMMNEYLRW  240
ETVGSKMIYP LTDEWEVHAP HDDDMGLLQD FGEVPGLDDE ALLLQDMLEI AETGDQGVHV  300
ERDGREDFID QFFSRGVVEE DLALGGSEGE FSLADIEGHG PPLLSGGGEL TPWEIAEGDY  360
IELNDFLFPN DDTPSWSQEY AIQLQERHSD NLPIQQSEQG SARRRSMLQM RGSGSGPVQR  420
SITVAYNLSG AQTLPAMSVL ELTGTSDSTT RASRPDDQQH EQRIAERLTV SQHPSFQSEH  480
EVATVDRHIS PQEWEDYLIT GLLPQSPTSE VHTSGATVDL VSEDMPLLPT TTEDIVITPD  540
NSTSHGVAPT SGSIISGASS EFDYSGFWSW LDAENKHPST PQVGNNLNEK GTGTQCASST  600
CHPSKYSAQK LQTPASLKTA DMRSDPSEQT SKRLEGLFHL LGSFPAPPAS AAEYSQAGTA  660
NPRFSSISVT ATDAHLTTFT ITCSRSNEGT QRVQAAVTSG HAAAVGGELY KNVVTKSGDQ  720
CKGDCKQLQC VTCSMQRAPT RQLVKGSRSG FVFVFLLGAV SALCWFFLLR GMWRVVHHMF  780
SVIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-51413115140Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.12e-74NAC domain containing protein 28