PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0177s0012.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 756aa    MW: 82027.5 Da    PI: 6.8262
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0177s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161360148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEde+l  +v+ +G+g+W+++ ++ g+ R++k+c++rw +yl
  Sphfalx0177s0012.1.p 13 KGAWTAEEDEKLRIYVETYGTGHWRSVGKKAGLQRCGKSCRLRWTNYL 60
                          79********************************************97 PP
2Myb_DNA-binding568.9e-1867109246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g++T++E++l+v++++ +G++ W++Ia++m+ gRt++++k++w++
  Sphfalx0177s0012.1.p  67 GSFTADEEDLIVKLHATHGSR-WSLIAAKMP-GRTDNDIKNHWNT 109
                           78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.006860IPR017930Myb domain
SuperFamilySSF466895.5E-3011107IPR009057Homeodomain-like
SMARTSM007171.3E-121262IPR001005SANT/Myb domain
PfamPF002491.1E-141360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221467IPR009057Homeodomain-like
CDDcd001671.18E-101560No hitNo description
PROSITE profilePS5129426.74761115IPR017930Myb domain
SMARTSM007172.6E-1665113IPR001005SANT/Myb domain
PfamPF002495.4E-1667109IPR001005SANT/Myb domain
CDDcd001672.16E-1268111No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2568115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MTRLSKPSDD VRKGAWTAEE DEKLRIYVET YGTGHWRSVG KKAGLQRCGK SCRLRWTNYL  60
RPDIRHGSFT ADEEDLIVKL HATHGSRWSL IAAKMPGRTD NDIKNHWNTR LKKKLCDKGI  120
DPVTHKPIAE LLRDFAGTIS QFSSTPGCTN IDQMAELQAA KRCFSDNLLS KAVHECRSSA  180
KPAAGAGAAA AAMSTLSPLS DVTTVNNKAE EYAAAAAAAA AAGDHHGFNI AAAAAAASRL  240
DHQHIQEHSN NSYSGSISMA ESSCSEEAFS RSGCSSHHEQ QPGSAAPPHV TMMQNTSLEQ  300
RRRRRTTRGG LQTDHEPCGQ IMYCNMSSSS AAAAAALRTD SAGAETYDPG QICTALTALD  360
DDENHVNPIL GMNRLDSIMS SSTIHGMTNF PSSLKNSNQE IENMFMRELF SSDGRVHSQL  420
QYPAQGTRMS VPGQQFQGVS EAVATRTISP APRLVNAAAA VQSTNDDNYM SRSWLARRNH  480
GKFSQQQEQG YVLNNMDDDD DDDLPCFTPS SRFSTHDQLN IVQDPAAATQ QLNKFVQDPA  540
TTHLVQTHGI TGQAHHQMHD SEKLRVHGMM GQAAHQMQDS EKFRVHGMMG EAQWHDSEKF  600
RSQEAESASA DVVRVPHEHV SLQDPIRNSG GAALQQIATE SGVMQGSSMS SLSFSGLLTS  660
HHHHHNNNNN NNCASQLNVQ SGYANAFSLN PSNFSSMGPG AAGLSNFANN FSGPSSLTHN  720
FSGNFGNLGT PTGVKFQDYG DVSSPRMVQL WDYQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27101154108B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305RRRRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-56myb domain protein 103