PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0183s0009.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

LBD

Protein Properties

Length: 201aa MW: 22070.9 Da PI: 8.6737

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0183s0009.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.9	6.2e-42	26	125	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+C++dC+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da+sslvyeA+ar+rdPvyG++g i++lqqq ++ Sphfalx0183s0009.2.p 26 PCAACKLLRRRCVQDCPFSPYFSPHEPQKFACVHKVFGASNVSKMLMEVPESQRADAASSLVYEAKARIRDPVYGCMGAISALQQQAQS 114 7************************************************************************************** PP DUF260 90 lkaelallkee 100 l++el+++++e Sphfalx0183s0009.2.p 115 LQTELNAVRRE 125 ****99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.35	25	126	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.7E-42	26	123	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MSGSSLDRRA TFMDTSEGQA NSSSTPCAAC KLLRRRCVQD CPFSPYFSPH EPQKFACVHK 60 VFGASNVSKM LMEVPESQRA DAASSLVYEA KARIRDPVYG CMGAISALQQ QAQSLQTELN 120 AVRREIMRYK HHDNNIVVAD APAATASAMM VSGYQRHNLI SDRGFVVVNP HSTQTTASDF 180 YNIPSCNNGA TPGLKERRYW *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-48	22	146	7	131	LOB family transfactor Ramosa2.1
5ly0_B	8e-48	22	146	7	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022872386.1	6e-68	LOB domain-containing protein 15
Refseq	XP_024362454.1	2e-68	LOB domain-containing protein 15-like
Refseq	XP_024975561.1	7e-68	LOB domain-containing protein 15
Swissprot	Q9AT61	3e-59	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2R6WX81	4e-72	A0A2R6WX81_MARPO; Uncharacterized protein
STRING	PP1S156_26V6.1	7e-68	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	5e-57	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Sphfalx0183s0009.2.p

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]