PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0183s0036.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 966aa MW: 105167 Da PI: 5.0937

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0183s0036.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	319.6	6.4e-98	500	897	1	347
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal........ 81 lv+ Ll+cAea+++ d++ a+alL rl+ ++sp+gdpm+R+a+yf+eAL +rl+++ + +++ ++s++++++ ++++++ Sphfalx0183s0036.1.p 500 LVHFLLACAEAMDACDFHIARALLIRLRANSSPHGDPMKRIAFYFAEALGERLTKELVQDCATRRSSRSTSSKLQNTITSGaaataaap 588 6899**************************************************554444444444444445444444436778999 PP GRAS 82 ...................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgv 147 ++ +e+ P+ kf+h+t NqaIle + ++ ++Hi+D+di qGlQWp L+qaLa R+ ++p lRiT++ Sphfalx0183s0036.1.p 589 ptavasassrpvldsdlayQASYEILPFEKFAHFTGNQAILETLLHHPKLHIVDLDIRQGLQWPGLIQALAVRKlggsSPPSLLRITAI 677 *************999999************************************************99884445589* PP GRAS 148 gspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll..................desv 218 g ++ +l++tg+rLa fA++l+vpfe+ v v ++le+l+ +++rv+ +E laVn++ lh+ll de+v Sphfalx0183s0036.1.p 678 GL----DASALHRTGKRLAAFAASLQVPFEYCV-VLESLENLQARNIRVEADEILAVNCSSVLHTLLscscksapevdsrrssaeDEDV 761 ....9***********************9.799************************************998655333333 PP GRAS 219 sleserdevL.klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak..........lpreseerikvErellgreivn 296 ++++L ++++ l+P +v + e ea++n+++Fl+rf+eal+yy alfd+lea+ + +se r +E++l +++i++ Sphfalx0183s0036.1.p 762 ----VIQSFLsNTIRALNPAIVSLLETEANLNAPKFLTRFVEALHYYCALFDALEATttaaacdggaRHMDSERRLQIEKFLYAPQIRD 846 ....446698458*************************************888789999888766678************* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 ++a+eg++rr rh + + W + +++aGF++ p+s +aa+qa+ll+r ++++ Sphfalx0183s0036.1.p 847 IIAHEGTDRRVRHVRSGAWTSYFTQAGFRSSPMSAYAADQAQLLVRLYQQQ 897 **********************************************954 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	55.124	474	904	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-95	500	897	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 966 aa Download sequence Send to blast
MEEQVAWMQQ QQQQEGAWVR RRKRRRRFRN SSDAAAGDDL LLLPLQWQLE DSSLLQQQQQ 60 LVHLDCNNYE HTCRKQQVDW PSAAAAASTP PVQSLQLEYS SYGASSCCSS SNSWPSYYKD 120 HLLLQAPTKL PWSSCNNKKV TVLEAAVVDD FHTFMEPTSV LDLQQQSITT TSRPSRSYSS 180 ASLSSQHSFS SSDAGSNPQR IQHAEPPPAA ATAADDDDDL HFVAPAQLAD QNQLLLPTVC 240 VSDSDIASWM DCMMDPNLAL LLPEFQAAEV ESSGGAAAAG DSELMMMAAG CSPRPAISKL 300 EGNHNTADMQ FSGTEIEFEF ETSLDKSFNG SCGAAQLSSF PNFFPVASTG MMMMQCDDVE 360 MQQQQQQQQE PAMESAVAAA GVCLWEDEAP MFLVPGQILS HEVCLVPSES NLQLQQKPLQ 420 RRLTNTRAAA PVFSSQGQQL LPHSSTRDAA ARSAARSCAA SPAVQSPPPQ AVGAGHAEKL 480 RLWQQQKQQQ DEEENTGLDL VHFLLACAEA MDACDFHIAR ALLIRLRANS SPHGDPMKRI 540 AFYFAEALGE RLTKELVQDC ATRRSSRSTS SKLQNTITSG AAATAAAPPT AVASASSRPV 600 LDSDLAYQAS YEILPFEKFA HFTGNQAILE TLLHHPKLHI VDLDIRQGLQ WPGLIQALAV 660 RKLGGSSPPS LLRITAIGLD ASALHRTGKR LAAFAASLQV PFEYCVVLES LENLQARNIR 720 VEADEILAVN CSSVLHTLLS CSCKSAPEVD SRRSSAEDED VVIQSFLSNT IRALNPAIVS 780 LLETEANLNA PKFLTRFVEA LHYYCALFDA LEATTTAAAC DGGARHMDSE RRLQIEKFLY 840 APQIRDIIAH EGTDRRVRHV RSGAWTSYFT QAGFRSSPMS AYAADQAQLL VRLYQQQQTS 900 RSSLSSSSSF SSSSSSSCSS SAAPDDDNMQ QPYKLTTGSN TTPPGAITLG WQDTPVITVS 960 SWTLC*

Sequence ? help Back to Top

Protein Sequence Length: 966 aa Download sequence Send to blast

MEEQVAWMQQ QQQQEGAWVR RRKRRRRFRN SSDAAAGDDL LLLPLQWQLE DSSLLQQQQQ  60
LVHLDCNNYE HTCRKQQVDW PSAAAAASTP PVQSLQLEYS SYGASSCCSS SNSWPSYYKD  120
HLLLQAPTKL PWSSCNNKKV TVLEAAVVDD FHTFMEPTSV LDLQQQSITT TSRPSRSYSS  180
ASLSSQHSFS SSDAGSNPQR IQHAEPPPAA ATAADDDDDL HFVAPAQLAD QNQLLLPTVC  240
VSDSDIASWM DCMMDPNLAL LLPEFQAAEV ESSGGAAAAG DSELMMMAAG CSPRPAISKL  300
EGNHNTADMQ FSGTEIEFEF ETSLDKSFNG SCGAAQLSSF PNFFPVASTG MMMMQCDDVE  360
MQQQQQQQQE PAMESAVAAA GVCLWEDEAP MFLVPGQILS HEVCLVPSES NLQLQQKPLQ  420
RRLTNTRAAA PVFSSQGQQL LPHSSTRDAA ARSAARSCAA SPAVQSPPPQ AVGAGHAEKL  480
RLWQQQKQQQ DEEENTGLDL VHFLLACAEA MDACDFHIAR ALLIRLRANS SPHGDPMKRI  540
AFYFAEALGE RLTKELVQDC ATRRSSRSTS SKLQNTITSG AAATAAAPPT AVASASSRPV  600
LDSDLAYQAS YEILPFEKFA HFTGNQAILE TLLHHPKLHI VDLDIRQGLQ WPGLIQALAV  660
RKLGGSSPPS LLRITAIGLD ASALHRTGKR LAAFAASLQV PFEYCVVLES LENLQARNIR  720
VEADEILAVN CSSVLHTLLS CSCKSAPEVD SRRSSAEDED VVIQSFLSNT IRALNPAIVS  780
LLETEANLNA PKFLTRFVEA LHYYCALFDA LEATTTAAAC DGGARHMDSE RRLQIEKFLY  840
APQIRDIIAH EGTDRRVRHV RSGAWTSYFT QAGFRSSPMS AYAADQAQLL VRLYQQQQTS  900
RSSLSSSSSF SSSSSSSCSS SAAPDDDNMQ QPYKLTTGSN TTPPGAITLG WQDTPVITVS  960
SWTLC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	7e-52	486	963	7	378	Protein SCARECROW
5b3h_D	7e-52	486	963	7	378	Protein SCARECROW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	26	RRKRRRR
2	21	25	RKRRR
3	21	28	RKRRRRFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-54	RGA-like 2

Link Out ? help Back to Top
Phytozome	Sphfalx0183s0036.1.p