PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0183s0036.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 965aa MW: 105080 Da PI: 5.0937

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0183s0036.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	319.6	6.4e-98	499	896	1	347
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal........ 81 lv+ Ll+cAea+++ d++ a+alL rl+ ++sp+gdpm+R+a+yf+eAL +rl+++ + +++ ++s++++++ ++++++ Sphfalx0183s0036.2.p 499 LVHFLLACAEAMDACDFHIARALLIRLRANSSPHGDPMKRIAFYFAEALGERLTKELVQDCATRRSSRSTSSKLQNTITSGaaataaap 587 6899**************************************************554444444444444445444444436778999 PP GRAS 82 ...................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgv 147 ++ +e+ P+ kf+h+t NqaIle + ++ ++Hi+D+di qGlQWp L+qaLa R+ ++p lRiT++ Sphfalx0183s0036.2.p 588 ptavasassrpvldsdlayQASYEILPFEKFAHFTGNQAILETLLHHPKLHIVDLDIRQGLQWPGLIQALAVRKlggsSPPSLLRITAI 676 *************999999************************************************99884445589* PP GRAS 148 gspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll..................desv 218 g ++ +l++tg+rLa fA++l+vpfe+ v v ++le+l+ +++rv+ +E laVn++ lh+ll de+v Sphfalx0183s0036.2.p 677 GL----DASALHRTGKRLAAFAASLQVPFEYCV-VLESLENLQARNIRVEADEILAVNCSSVLHTLLscscksapevdsrrssaeDEDV 760 ....9***********************9.799************************************998655333333 PP GRAS 219 sleserdevL.klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak..........lpreseerikvErellgreivn 296 ++++L ++++ l+P +v + e ea++n+++Fl+rf+eal+yy alfd+lea+ + +se r +E++l +++i++ Sphfalx0183s0036.2.p 761 ----VIQSFLsNTIRALNPAIVSLLETEANLNAPKFLTRFVEALHYYCALFDALEATttaaacdggaRHMDSERRLQIEKFLYAPQIRD 845 ....446698458*************************************888789999888766678************* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 ++a+eg++rr rh + + W + +++aGF++ p+s +aa+qa+ll+r ++++ Sphfalx0183s0036.2.p 846 IIAHEGTDRRVRHVRSGAWTSYFTQAGFRSSPMSAYAADQAQLLVRLYQQQ 896 **********************************************954 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	55.124	473	903	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-95	499	896	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence Send to blast
MEEQVAWMQQ QQQQEGAWVR RRKRRRRFRN SSDAAAGDDL LLLPLQWQLE DSSLLQQQQQ 60 LVHLDCNNYE HTCRKQQVDW PSAAAAASTP PVQSLQLEYS SYGASSCCSS SNSWPSYYKD 120 HLLLQAPTKL PWSCNNKKVT VLEAAVVDDF HTFMEPTSVL DLQQQSITTT SRPSRSYSSA 180 SLSSQHSFSS SDAGSNPQRI QHAEPPPAAA TAADDDDDLH FVAPAQLADQ NQLLLPTVCV 240 SDSDIASWMD CMMDPNLALL LPEFQAAEVE SSGGAAAAGD SELMMMAAGC SPRPAISKLE 300 GNHNTADMQF SGTEIEFEFE TSLDKSFNGS CGAAQLSSFP NFFPVASTGM MMMQCDDVEM 360 QQQQQQQQEP AMESAVAAAG VCLWEDEAPM FLVPGQILSH EVCLVPSESN LQLQQKPLQR 420 RLTNTRAAAP VFSSQGQQLL PHSSTRDAAA RSAARSCAAS PAVQSPPPQA VGAGHAEKLR 480 LWQQQKQQQD EEENTGLDLV HFLLACAEAM DACDFHIARA LLIRLRANSS PHGDPMKRIA 540 FYFAEALGER LTKELVQDCA TRRSSRSTSS KLQNTITSGA AATAAAPPTA VASASSRPVL 600 DSDLAYQASY EILPFEKFAH FTGNQAILET LLHHPKLHIV DLDIRQGLQW PGLIQALAVR 660 KLGGSSPPSL LRITAIGLDA SALHRTGKRL AAFAASLQVP FEYCVVLESL ENLQARNIRV 720 EADEILAVNC SSVLHTLLSC SCKSAPEVDS RRSSAEDEDV VIQSFLSNTI RALNPAIVSL 780 LETEANLNAP KFLTRFVEAL HYYCALFDAL EATTTAAACD GGARHMDSER RLQIEKFLYA 840 PQIRDIIAHE GTDRRVRHVR SGAWTSYFTQ AGFRSSPMSA YAADQAQLLV RLYQQQQTSR 900 SSLSSSSSFS SSSSSSCSSS AAPDDDNMQQ PYKLTTGSNT TPPGAITLGW QDTPVITVSS 960 WTLC*

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence Send to blast

MEEQVAWMQQ QQQQEGAWVR RRKRRRRFRN SSDAAAGDDL LLLPLQWQLE DSSLLQQQQQ  60
LVHLDCNNYE HTCRKQQVDW PSAAAAASTP PVQSLQLEYS SYGASSCCSS SNSWPSYYKD  120
HLLLQAPTKL PWSCNNKKVT VLEAAVVDDF HTFMEPTSVL DLQQQSITTT SRPSRSYSSA  180
SLSSQHSFSS SDAGSNPQRI QHAEPPPAAA TAADDDDDLH FVAPAQLADQ NQLLLPTVCV  240
SDSDIASWMD CMMDPNLALL LPEFQAAEVE SSGGAAAAGD SELMMMAAGC SPRPAISKLE  300
GNHNTADMQF SGTEIEFEFE TSLDKSFNGS CGAAQLSSFP NFFPVASTGM MMMQCDDVEM  360
QQQQQQQQEP AMESAVAAAG VCLWEDEAPM FLVPGQILSH EVCLVPSESN LQLQQKPLQR  420
RLTNTRAAAP VFSSQGQQLL PHSSTRDAAA RSAARSCAAS PAVQSPPPQA VGAGHAEKLR  480
LWQQQKQQQD EEENTGLDLV HFLLACAEAM DACDFHIARA LLIRLRANSS PHGDPMKRIA  540
FYFAEALGER LTKELVQDCA TRRSSRSTSS KLQNTITSGA AATAAAPPTA VASASSRPVL  600
DSDLAYQASY EILPFEKFAH FTGNQAILET LLHHPKLHIV DLDIRQGLQW PGLIQALAVR  660
KLGGSSPPSL LRITAIGLDA SALHRTGKRL AAFAASLQVP FEYCVVLESL ENLQARNIRV  720
EADEILAVNC SSVLHTLLSC SCKSAPEVDS RRSSAEDEDV VIQSFLSNTI RALNPAIVSL  780
LETEANLNAP KFLTRFVEAL HYYCALFDAL EATTTAAACD GGARHMDSER RLQIEKFLYA  840
PQIRDIIAHE GTDRRVRHVR SGAWTSYFTQ AGFRSSPMSA YAADQAQLLV RLYQQQQTSR  900
SSLSSSSSFS SSSSSSCSSS AAPDDDNMQQ PYKLTTGSNT TPPGAITLGW QDTPVITVSS  960
WTLC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-52	485	962	8	379	Protein SCARECROW
5b3h_A	8e-52	485	962	7	378	Protein SCARECROW
5b3h_D	8e-52	485	962	7	378	Protein SCARECROW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	26	RRKRRRR
2	21	25	RKRRR
3	21	28	RKRRRRFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-54	RGA-like 2

Link Out ? help Back to Top
Phytozome	Sphfalx0183s0036.2.p