PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0186s0019.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

ZF-HD

Protein Properties

Length: 438aa MW: 47748 Da PI: 7.8091

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0186s0019.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	61.3	2e-19	47	98	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + rY C++Nh ++ Gg ++DGC+Ef ++ + + +C+ACgCHR+FH r +e+ Sphfalx0186s0019.2.p 47 QPRYGPCRRNHSVASGGLTLDGCQEFDTD-----SNLSKTCSACGCHRSFHSRLTEN 98 569*********************997.....45789**********998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-9	49	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.1E-15	49	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	19.634	50	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MVGDVVPNDL NIPSLGTPSK QMRLPGGIAE GSGEIVGSPS SFLPSPQPRY GPCRRNHSVA 60 SGGLTLDGCQ EFDTDSNLSK TCSACGCHRS FHSRLTENQK FENIPPLITQ VASTALATST 120 QFLSPSSGIL TSLSPDDSCR EKTNPEKQKA EPLHLVNLSR GRKPCRSRQL RTKSCQIWTD 180 YLRPLALSEG INIHFCDNKD VCLAEMQKGG HTSCAARRLQ LKWPDSVPFI HPKDFTIKEL 240 QSFIDTYEVS WRKLLPHPPH TSGQSPASSA ALPRVPKRDA DPCKVSTKEL RYWLRENGKP 300 IFSVHPKAAN QFVNMGKLAS MILRKGGKRK FEAASGWDLF ITSSEGMNKP SLSSMERRKC 360 IHTVKALYNK FIMEYIQDIL KDMGLEGDGS MAAAEISDAE GNEEDDVDDN GHVDATSGAN 420 GDGDTGLCTG STDPSKI*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MVGDVVPNDL NIPSLGTPSK QMRLPGGIAE GSGEIVGSPS SFLPSPQPRY GPCRRNHSVA  60
SGGLTLDGCQ EFDTDSNLSK TCSACGCHRS FHSRLTENQK FENIPPLITQ VASTALATST  120
QFLSPSSGIL TSLSPDDSCR EKTNPEKQKA EPLHLVNLSR GRKPCRSRQL RTKSCQIWTD  180
YLRPLALSEG INIHFCDNKD VCLAEMQKGG HTSCAARRLQ LKWPDSVPFI HPKDFTIKEL  240
QSFIDTYEVS WRKLLPHPPH TSGQSPASSA ALPRVPKRDA DPCKVSTKEL RYWLRENGKP  300
IFSVHPKAAN QFVNMGKLAS MILRKGGKRK FEAASGWDLF ITSSEGMNKP SLSSMERRKC  360
IHTVKALYNK FIMEYIQDIL KDMGLEGDGS MAAAEISDAE GNEEDDVDDN GHVDATSGAN  420
GDGDTGLCTG STDPSKI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	1e-13	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	Sphfalx0186s0019.2.p