PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0189s0018.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 826aa    MW: 90352.7 Da    PI: 6.338
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0189s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.6e-21114169156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++ +++t+ q++e+e lF+++++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k
  Sphfalx0189s0018.1.p 114 KKRYHRHTARQIQEMEMLFKECPHPDDKQRQQLSRELGLEPRQVKFWFQNRRTQMK 169
                           688899***********************************************998 PP
2START197.18e-623205482206
                           HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                 START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                           la +a++el+++a+a++p+W+ +     e +n++e++ +f+++ +        ++ea r++g+v  +++ lve+l+d+  qW e+++  
  Sphfalx0189s0018.1.p 320 LAVTAMEELLRMAQADQPLWMPVDsgniELLNYEEYTLQFPRGIGfarphagLKTEATRETGLVMSDAVSLVETLMDSC-QWMEMFPcm 407
                           6789******************99999999************999**********************************.********* PP

                           ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS
                 START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157
                             +a t++v+s+g      galqlm+aelq+lsplvp R+ +f+Ry++q+ +g w++vdvSvds +++p  +s++R++++pSg+li+++
  Sphfalx0189s0018.1.p 408 vsRALTVDVLSTGvngnrhGALQLMYAELQVLSPLVPtREIYFLRYCKQHAEGIWAVVDVSVDSIRDNP-PPSLMRCRRRPSGMLIQDT 495
                           *********************************************************************.7****************** PP

                           CTCEEEEEEEE-EE--....SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                 START 158 snghskvtwvehvdlk....grlphwllrslvksglaegaktwvatlqrqcek 206
                           sng++kvt veh++++    g+ +h l+r lv+sg+a+ga++w atlqrqce+
  Sphfalx0189s0018.1.p 496 SNGYCKVTAVEHMEYNddrgGAAVHRLYRDLVNSGMAFGAQRWIATLQRQCER 548
                           *************99632226677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-2097171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-2297165IPR009057Homeodomain-like
PROSITE profilePS5007117.297111171IPR001356Homeobox domain
SMARTSM003893.1E-19112175IPR001356Homeobox domain
CDDcd000863.92E-19113171No hitNo description
PfamPF000461.4E-18114169IPR001356Homeobox domain
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
PROSITE profilePS5084846.901310551IPR002913START domain
SuperFamilySSF559617.14E-37311550No hitNo description
CDDcd088753.03E-122314547No hitNo description
SMARTSM002344.9E-52319548IPR002913START domain
PfamPF018522.6E-52320548IPR002913START domain
Gene3DG3DSA:3.30.530.203.2E-5389548IPR023393START-like domain
SuperFamilySSF559613.21E-21578750No hitNo description
SuperFamilySSF559613.21E-21777817No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MRLGGVTVQV TGNGTLGRGS FADLGGMPPG VMAPPRPVPP LTGQRHGKPY SSPSLSLAPP  60
MCLEGQREMT SQTVEGEQQQ KNKEEMQEYE SRSGSDNMEG GSGDDQDPDQ PPRKKRYHRH  120
TARQIQEMEM LFKECPHPDD KQRQQLSREL GLEPRQVKFW FQNRRTQMKA QTERTENTLL  180
RQENDKLRSE NILIREALKN PTCQHCGGGP STFGEMSLHE QQLRIENSRL KEELDRVSAL  240
AAKYLGRSIP SYVPMQITPI APLSLPSSSL DPQAVAGTSS FGGHPTAPGD MDIVHNPSVV  300
DVATRPGGLT EAEKPLVVDL AVTAMEELLR MAQADQPLWM PVDSGNIELL NYEEYTLQFP  360
RGIGFARPHA GLKTEATRET GLVMSDAVSL VETLMDSCQW MEMFPCMVSR ALTVDVLSTG  420
VNGNRHGALQ LMYAELQVLS PLVPTREIYF LRYCKQHAEG IWAVVDVSVD SIRDNPPPSL  480
MRCRRRPSGM LIQDTSNGYC KVTAVEHMEY NDDRGGAAVH RLYRDLVNSG MAFGAQRWIA  540
TLQRQCERLA SLMQAGNLPS RDMVGPVPTA DGRRSMLKLA QRMTNNFCAG VSASTLHTWT  600
TLASSSGEDD GVRVMTRNSI DNPGEPHGII LSAATSIWLP VSPQRVFHFL RDESLRSKWD  660
ILSNGGVVTE MAHISKGQDP GNNVSLLGVN PLNSNQSNML ILQESCTDAF GSLVIYAPVD  720
IPAMDLVMRG GDPAYVALLP SGFAILPDGP ENRRTITAAS HGAGAQLTDS PRTMTGGGSL  780
LTVAFQILVS TIPSARLSLE SVATVNNLIS RTVQRIKAAL NCEEV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394838.10.0homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_024394839.10.0homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLQ147S40.0Q147S4_PHYPA; Class IV HD-Zip protein HDZ43
STRINGPP1S209_10V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2