PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0193s0032.3.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 366aa    MW: 40762.9 Da    PI: 5.0542
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0193s0032.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3881.1e-118436211373
                  GRAS  11 avssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                           avs++d  +aq+lL  l ++ +  gd+++R+ +yft ALa+r++r  +++  +lp    ++  s+e+laa  ++++v+P+++f+hltaN
  Sphfalx0193s0032.3.p   4 AVSQNDWGKAQQLLGVLGTRLTAPGDSVERVSSYFTAALATRISR-ATGTQVSLPLGLIHPPGSDEVLAANLALNQVTPFIRFAHLTAN 91 
                           899******************************************.555555677777776679999999999**************** PP

                  GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                           qa+lea++ge  vHi+D+di +GlQWp+++qaLa  R+    g p+lRiTg+g+    +++ le t +rLa+fA+++++pfef + + +
  Sphfalx0193s0032.3.p  92 QALLEALAGECYVHIVDLDIVHGLQWPPFMQALAdLRAdqgPGLPQLRITGIGK----DRQILEMTSRRLADFAQSINLPFEFIP-LIQ 175
                           **********************************76777544578*********....9**************************.599 PP

                  GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                           +l++l++++L++++gEalaVn++lqlh ll+e        +++L ++ sl+P+vv+++e+e++ n++ Fl+rf++al++ys+lfdsl+a
  Sphfalx0193s0032.3.p 176 NLDSLKPSMLQLRTGEALAVNCMLQLHGLLEEAPVAL---ESFLGMLYSLNPRVVTLAEREMSSNQPIFLDRFADALNHYSTLFDSLDA 261
                           9*****************************6644333...47*********************************************** PP

                  GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                           +lp+ s+eri vE+ ++ +ei n+v ce++e+++r +++++Wr  +e+aGF+ ++ se+a +qa+lllr ++ s+gy++ e++g+l+lg
  Sphfalx0193s0032.3.p 262 TLPPSSSERIRVEQLWFWKEIANIVGCEESEHIMRYQKFHQWRIFMETAGFQLLSTSEFALSQARLLLRLHYpSEGYHLVEDDGCLLLG 350
                           ***************************************************************************************** PP

                  GRAS 362 WkdrpLvsvSaW 373
                           W+d+pL++vS+W
  Sphfalx0193s0032.3.p 351 WRDQPLFAVSSW 362
                           ************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.7611342IPR005202Transcription factor GRAS
PfamPF035143.8E-1164362IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MLLAVSQNDW GKAQQLLGVL GTRLTAPGDS VERVSSYFTA ALATRISRAT GTQVSLPLGL  60
IHPPGSDEVL AANLALNQVT PFIRFAHLTA NQALLEALAG ECYVHIVDLD IVHGLQWPPF  120
MQALADLRAD QGPGLPQLRI TGIGKDRQIL EMTSRRLADF AQSINLPFEF IPLIQNLDSL  180
KPSMLQLRTG EALAVNCMLQ LHGLLEEAPV ALESFLGMLY SLNPRVVTLA EREMSSNQPI  240
FLDRFADALN HYSTLFDSLD ATLPPSSSER IRVEQLWFWK EIANIVGCEE SEHIMRYQKF  300
HQWRIFMETA GFQLLSTSEF ALSQARLLLR LHYPSEGYHL VEDDGCLLLG WRDQPLFAVS  360
SWNAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-69436328378Protein SCARECROW
5b3h_D5e-69436328378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377672.11e-164scarecrow-like protein 18
RefseqXP_024377674.11e-164scarecrow-like protein 18
RefseqXP_024377675.11e-164scarecrow-like protein 18
RefseqXP_024377676.11e-164scarecrow-like protein 18
RefseqXP_024377677.11e-164scarecrow-like protein 18
TrEMBLA0A2K1KFX51e-163A0A2K1KFX5_PHYPA; Uncharacterized protein
STRINGPP1S240_118V6.11e-164(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.15e-90GRAS family protein