PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0194s0025.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB

Protein Properties

Length: 968aa MW: 108025 Da PI: 4.8147

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0194s0025.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	9.7e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Sphfalx0194s0025.1.p 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.9	1.5e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Sphfalx0194s0025.1.p 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPAQCLERYEKLL 103 68***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.008	2	57	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-18	5	56	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-15	6	55	IPR001005	SANT/Myb domain
Pfam	PF13921	4.5E-13	10	70	No hit	No description
CDD	cd00167	5.77E-12	10	53	No hit	No description
SuperFamily	SSF46689	6.11E-21	33	108	IPR009057	Homeodomain-like
CDD	cd11659	9.06E-31	55	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.9E-14	57	104	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-12	58	105	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.529	58	107	IPR017930	Myb domain
Pfam	PF11831	4.8E-56	407	663	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009870	Biological Process	defense response signaling pathway, resistance gene-dependent
GO:0010204	Biological Process	defense response signaling pathway, resistance gene-independent
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPAQCLERYE KLLDAACAKD ENYEPADDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDGRHR RRKQKGIDYN AEIPFEKKPP PGFFEVPHEA PVEQPQFPTT 240 IEELEGKRRV DIESQLRKQD VARNKIAERR DAPAAVMQVN KLNDPEAVRK RSKLMLPEPQ 300 ISDRELEEIA KMGYASDLIS GEDGLVEGSG VTRSLLSNYN QTPARPGMTP LRTPQRTPGG 360 KGDAIMMEAE NLARLRETQT PLFGGENPDL HPSDFSGVTP KKKEIQTPNP IATPLRTPSG 420 ATGATPRLSM TPAKDVAVYG MTPKGTPIRD ELHINEGMDT PSLESSKAEK LRQAELRRHL 480 RMGLGDLPAP KNEYQIMVPD LPEEEPVEGD DMEADMSDVL ARQHAEEAAK QAALLRKRSK 540 VLQRVLPRPP PAAIEMMRAS LAYGEDGKAA PAPVTLIDHA DLLVRAELVA LLEYDAAKYP 600 MLEEESSKAK KKGAGKNAAN GNPQVPVPVL EDFDEADLND AGLLIEEELG YIRSAMGHED 660 ATLDDYAEAR DACVDDLMYL PTRDSFGLAS VASTSDRLAA LQYQFENVKK QMEAETRKAV 720 RLEQKIKVLT QGYQIRADAL WRQIELTFKE ADTLGTELEC FWALHRQEQL AAPRRIENLQ 780 DAVKQQSEKE RMLQLRYENL LVEQENLRGF IHDHDAAAAK AAEEKEIAEK KAAEEKQAME 840 DMNTAEEARA AEEADAAKKR EEEDKPMADQ SDDKSVEEQS AVEKALQEKD NTDAPTLATA 900 VVEAEEAKAN DMVEASKAEA LSLEGPTETD KEGPTAMEGL EDEPVGPPPP PPESQDDGDD 960 TSSDRRS*

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence Send to blast

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPAQCLERYE KLLDAACAKD ENYEPADDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDGRHR RRKQKGIDYN AEIPFEKKPP PGFFEVPHEA PVEQPQFPTT  240
IEELEGKRRV DIESQLRKQD VARNKIAERR DAPAAVMQVN KLNDPEAVRK RSKLMLPEPQ  300
ISDRELEEIA KMGYASDLIS GEDGLVEGSG VTRSLLSNYN QTPARPGMTP LRTPQRTPGG  360
KGDAIMMEAE NLARLRETQT PLFGGENPDL HPSDFSGVTP KKKEIQTPNP IATPLRTPSG  420
ATGATPRLSM TPAKDVAVYG MTPKGTPIRD ELHINEGMDT PSLESSKAEK LRQAELRRHL  480
RMGLGDLPAP KNEYQIMVPD LPEEEPVEGD DMEADMSDVL ARQHAEEAAK QAALLRKRSK  540
VLQRVLPRPP PAAIEMMRAS LAYGEDGKAA PAPVTLIDHA DLLVRAELVA LLEYDAAKYP  600
MLEEESSKAK KKGAGKNAAN GNPQVPVPVL EDFDEADLND AGLLIEEELG YIRSAMGHED  660
ATLDDYAEAR DACVDDLMYL PTRDSFGLAS VASTSDRLAA LQYQFENVKK QMEAETRKAV  720
RLEQKIKVLT QGYQIRADAL WRQIELTFKE ADTLGTELEC FWALHRQEQL AAPRRIENLQ  780
DAVKQQSEKE RMLQLRYENL LVEQENLRGF IHDHDAAAAK AAEEKEIAEK KAAEEKQAME  840
DMNTAEEARA AEEADAAKKR EEEDKPMADQ SDDKSVEEQS AVEKALQEKD NTDAPTLATA  900
VVEAEEAKAN DMVEASKAEA LSLEGPTETD KEGPTAMEGL EDEPVGPPPP PPESQDDGDD  960
TSSDRRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	0.0	2	809	3	800	Cell division cycle 5-like protein
5xjc_L	0.0	2	809	3	800	Cell division cycle 5-like protein
5yzg_L	0.0	2	809	3	800	Cell division cycle 5-like protein
5z56_L	0.0	2	809	3	800	Cell division cycle 5-like protein
5z57_L	0.0	2	809	3	800	Cell division cycle 5-like protein
5z58_L	0.0	2	809	3	800	Cell division cycle 5-like protein
6ff4_L	0.0	2	809	3	800	Cell division cycle 5-like protein
6ff7_L	0.0	2	809	3	800	Cell division cycle 5-like protein
6icz_L	0.0	2	809	3	800	Cell division cycle 5-like protein
6id0_L	0.0	2	809	3	800	Cell division cycle 5-like protein
6id1_L	0.0	2	809	3	800	Cell division cycle 5-like protein
6qdv_O	0.0	2	809	3	800	Cell division cycle 5-like protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	202	KRRELKAAGIDGRHRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00028	SELEX	Transfer from AT1G09770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024370979.1	0.0	cell division cycle 5-like protein
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A176WFB4	0.0	A0A176WFB4_MARPO; Uncharacterized protein
STRING	PP1S641_1V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	cell division cycle 5

Link Out ? help Back to Top
Phytozome	Sphfalx0194s0025.1.p

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]